BAC Information

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BAC

Clone NameMSMg01-290N09
Chromosome3 (Build37)
Map Location 127,572,329 - 127,744,146
singlet/doubletdoublet
Overlap gene5730508B09Rik, LOC100043382
Upstream geneAnk2, LOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199
Downstream geneEG668828, LOC100043393, EG668831
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290N09.T7 (MSMg01no290_n09.b1)MSMg01-290N09.TJ (MSMg01no290_n09.g1)
ACCAG420007AG420008
length737752
length of high quality
(start - end)		480 (72 - 551)251 (126 - 376)
definitionCHROMAT_FILE: MSMg01no290_n09.b1 PHD_FILE: MSMg01no290_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:29 2005CHROMAT_FILE: MSMg01no290_n09.g1 PHD_FILE: MSMg01no290_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,572,329 - 127,572,808)(127,743,912 - 127,744,146)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAA
TTCTTGTTACTTTGCGCAGAATTTCAGAAAGCCAAGTTCAATGTTCTCAC
ACTATTCTGCTTCAGAATTTCTCCCAGAATAGTGTTTAAAATTGCATGGG
TAAGAACTTTACAAAATGGCCTAATAAACAGGCTTTAACTAAGTTAACTA
AGCAGGGTTTAGTTAACGCCCTGTCAAACAAAAATGTCTCACCACCTCAC
TTTTGTATTTAAATTTCTTTGTTCAAATAGACGACTCTTAAACAAAAGTG
TAACCTTTTAGGTTCTTTAAGAAAATCAAAAATATCAAAGTCATTTTTCA
TTTTCAAAATGTATTTAAAGAAATGCTTGTTTCAGTATAATAAAACCCCA
TACTATACATTAGAAACATGACTAGACAATTGGCTTTAATCCTAGAATAT
TACAAGTGGCTACTGAGTTCTAGATTTAAACATGTGATTTTATTCTGAAG
TTTGTACTCTTCAATACAGATATCAAAGAAAAATTATTTGATTTTTTTTT
TAACTAGATAGAAATTACTCTTTTTGGGAGGAAAACTCCATGCCATGACA
GATAAAGCACTGTTTTACATCTCAGAGTAATTGCTGTAAAAGAACTATAA
ATTATGGATCTTTTGGGAAAGATATGCTCTGAATATGTCTCCTAGAACCC
TCTTGCAAGTGTTTAGCCAATGTTATCACCACAATGG

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTAGGTCCATTTGGCCACAATATCCCCT
CGGCTACCTCTTCAATATATTTACACAACACAAAATTTTGTCATAACCAT
GGTATTTACTAGAATTTTTTACCTATTAAAATTGTGTAAATATTTTAACG
TTTTAATACTGTTAAGCCCTAAACTGCATTGTGCTTCTGACTGACGGTTA
CAATGCAGCAAACTTTTGTAGCATCTATTTCCTTCCCAACAATGGATGGT
TTCCTTTTATGCAGCCATCTCTCCTCCTCCCCGTATAGCTCATATAGGTG
TTCACACTAACCTTTTCTCTTCCTCACCCAGCGGATCTGATTGATCCGCC
CCTGTGGTTGGTTCAGGAACACCCGCAAGTCAATCATCGAGTGGCCCTGC
CCTGGTACAAGGATTAGTACAGGAACGGACATGTGACACGTCTTAGACAC
CTGTAACACACAGAAAGGTCACAGACAACTCCTGTGACATAATTTTTCTC
ACTTTTAATTTAAGAATACTAGCCACCAGGAAAAGAGTTTTTCCACTTTT
CTCTGAAAGCCATGAAAATGGATATGCGAAGTTTAAAGCAACCTATAGTT
CAGTCTGTGTCCCAAAGCAAACCCGCAGGTCCCCTGTATCCCAGCGTACC
GAACGCCTCTTCCATCTGAATCAACCCCTAAATCCTTCCTCTGAACTCTC
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_n09.b1 MSMg01no290_n09.b1 CHROMAT_FILE:
MSMg01no290_n09.b1 PHD_FILE: MSMg01no290_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:29 2005
         (480 letters)



>mm_chr3_127572129_127573008
          Length = 880

 Score =  874 bits (452), Expect = 0.0
 Identities = 473/480 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcagaaagccaagttcaatgttctcacactattctgcttcagaatttctcccagaata 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 201 tttcagaaagccaagttcaatgttctcacactattctgcttcagaatttcttgcagaata 260

                                                                       
Query: 61  gtgtttaaaattgcatgggtaagaactttacaaaatggcctaataaacaggctttaacta 120
           | ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 261 gcgtttaaaattgcatgggtaagaactttacaaaatggcctaataaacacgttttaacta 320

                                                                       
Query: 121 agttaactaagcagggtttagttaacgccctgtcaaacaaaaatgtctcaccacctcact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttaactaagcagggtttagttaacgccctgtcaaacaaaaatgtctcaccacctcact 380

                                                                       
Query: 181 tttgtatttaaatttctttgttcaaatagacgactcttaaacaaaagtgtaaccttttag 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 tttgtatttaaatttctttgttcaaattgacgactcttaaacaaaagtgtaaccttttag 440

                                                                       
Query: 241 gttctttaagaaaatcaaaaatatcaaagtcatttttcattttcaaaatgtatttaaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttctttaagaaaatcaaaaatatcaaagtcatttttcattttcaaaatgtatttaaaga 500

                                                                       
Query: 301 aatgcttgtttcagtataataaaaccccatactatacattagaaacatgactagacaatt 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 aatgcttgtttcagtataataaaaccccatactatacattagaaacatgactggacaatt 560

                                                                       
Query: 361 ggctttaatcctagaatattacaagtggctactgagttctagatttaaacatgtgatttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggctttaatcctagaatattacaagtggctactgagttctagatttaaacatgtgatttt 620

                                                                       
Query: 421 attctgaagtttgtactcttcaatacagatatcaaagaaaaattatttgatttttttttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attctgaagtttgtactcttcaatacagatatcaaagaaaaattatttgatttttttttt 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no290_n09.g1 MSMg01no290_n09.g1 CHROMAT_FILE:
MSMg01no290_n09.g1 PHD_FILE: MSMg01no290_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:29 2005
         (251 letters)



>mm_chr3_127743712_127744362
          Length = 651

 Score =  431 bits (223), Expect = e-125
 Identities = 232/235 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caacacaaaattttgtcataaccatggtatttactagaattttttacctattaaaattgt 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 435 caacacaaaattttgtcataaccatggtatttactagatttttttacctattaaaattgt 376

                                                                       
Query: 61  gtaaatattttaacgttttaatactgttaagccctaaactgcattgtgcttctgactgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gtaaatattttaacgttttaatactgttaagccctaaactgcattgtgcttctgactgac 316

                                                                       
Query: 121 ggttacaatgcagcaaacttttgtagcatctatttccttcccaacaatggatggtttcct 180
            ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 agttacaatggagcaaacttttgtagcatctatttccttcccaacaatggatggtttcct 256

                                                                  
Query: 181 tttatgcagccatctctcctcctccccgtatagctcatataggtgttcacactaa 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tttatgcagccatctctcctcctccccgtatagctcatataggtgttcacactaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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