Query= MSMg01no291_a01.b1 MSMg01no291_a01.b1 CHROMAT_FILE:
MSMg01no291_a01.b1 PHD_FILE: MSMg01no291_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:41 2005
(668 letters)
>mm_chr3_83409387_83410454
Length = 1068
Score = 1172 bits (606), Expect = 0.0
Identities = 651/666 (97%), Gaps = 2/666 (0%)
Strand = Plus / Minus
Query: 4 ggaattctcaaatatggctcaggggagacaccataggacatagtagtttgaggaggtgag 63
||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 868 ggaatcctcaaatatggatcagggaagacaccataggacatagtagtttgaggaggtgag 809
Query: 64 aaaattagaatagaggagagaaggaagggcaggcaggaaagagtggagaagaggaactca 123
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 aaaattagaagagaggagagaaggaagggcaggcaggaaagagtggagaagaggaactca 749
Query: 124 caggctggtggcaaaggatacttcttgatagcacaagagatcacgttgtcatctctgtat 183
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 748 caggctggtggcaaaggatacttcttgatagcacaagaaatcacgttgtcatctctgtat 689
Query: 184 tcctagaactttacctagcactcagcccctagtgcagcatgaactgagaatgccaacttg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tcctagaactttacctagcactcagcccctagtgcagcatgaactgagaatgccaacttg 629
Query: 244 ggaatgggtcagaatgaatgggaacaaaggccaggaataagaatgtccctgtgaggcaag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ggaatgggtcagaatgaatgggaacaaaggccaggaataagaatgtccctgtgaggcaag 569
Query: 304 gatgagaggtctgagaaggagcacactggggtgccaggagtaacccaagaagatttgagg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gatgagaggtctgagaaggagcacactggggtgccaggagtaacccaagaagatttgagg 509
Query: 364 cgtgttatacactctcctatgtataggttactgtatctattacatagattgtgtaggggg 423
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tgtgttatatagtctcctatgtataggttactgtatctattacatagattgtgtaggggg 449
Query: 424 tttgtatagtcttggagcctagtgagttac-tcctaagattttggaaccctgcctcttct 482
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 448 tttgtatagtcttggagcctagtgagtt-cttcctaagattttggaaccctgcctcttct 390
Query: 483 catcttccttcatttcgttttacattctatggtgaggattaaccgagctggactcacatg 542
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 389 cttcttccttcatttcgttttacattctatggcgaggattaaccgagctggactcacatg 330
Query: 543 caccaggataatgctctacactggctccatcctcatcctgtcctctctttctgatcgcca 602
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 329 caccaggataatgctctacactggctccatcctcatcttgtcctctctttctgatcgcca 270
Query: 603 aggcaaccacatcgtaactgaatccctccttgtgaaccgtgctgtgttttctttgtattt 662
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 269 aggcaaccacatcgtaactgaatccctccttgcgaaccctgctgtgttttctttgtattt 210
Query: 663 gtggtt 668
||||||
Sbjct: 209 gtggtt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no291_a01.g1 MSMg01no291_a01.g1 CHROMAT_FILE:
MSMg01no291_a01.g1 PHD_FILE: MSMg01no291_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:41 2005
(333 letters)
>mm_chr3_83262335_83263064
Length = 730
Score = 598 bits (309), Expect = e-175
Identities = 327/333 (98%), Gaps = 3/333 (0%)
Strand = Plus / Plus
Query: 1 tcactctagaggagatgagcacaggtttgttaaacagctacttaggtatgtgggttggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcactctagaggagatgagcacaggtttgttaaacagctacttaggtatgtgggttggaa 260
Query: 61 tttatgacatcctatatgcaaaactcttatgcagcaattgggaagctagttcatgggagc 120
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 261 tttatgacatcctatatgcaaaactcttatgcagcaattgggaagctag-tcat-ggagc 318
Query: 121 agtcacgagggaagcacacttgctttttgatattctgcaaggcaaatatcatgacataat 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aggcacgagggaagcacacttgctttttgatattctgcaaggcaaatatcatgacataat 378
Query: 181 gaggattaagggttatacaggttagttacccatacccaccaccatcaactgtaagttgaa 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 379 gaggattaagggttatacaggttagttacccacacccaccaccatcaactgtaagttgaa 438
Query: 241 tatctagacgtgttgtttattttattcataggtacagccagccacacatgctaaaccact 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ta-ctagacgtgttgtttattttattcataggtacagccagccacacatgctaaaccact 497
Query: 301 tagaacagtttattgacactggcaaaaagcaaa 333
|||| ||||||||||||||||||||||||||||
Sbjct: 498 tagagcagtttattgacactggcaaaaagcaaa 530
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 730
Length adjustment: 9
Effective length of query: 324
Effective length of database: 721
Effective search space: 233604
Effective search space used: 233604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
