CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCCCTTTGCCTCCAGGCTAGCCAGCATGTGTGGTGACTCGCTTTG
TGTATGATTTTTAGTATCAACAGTAATAATGCAATGATACCATACATATC
CATCTGTGACTATTAAATATGAAAATATAGTTTGGATACTATTGTAATTT
TCACTTGATGAATATACTATAATTCTTAGTCACTTCCTTATTGATGGTCT
TAAAAAGAACTTCTGTTTTTACAACCACAAATGATGTGGTTTTAATGCTT
TGTGTGTGTGCTGGGAACAGGAACTCGGGTCCTTGCACATGCTAGGCACA
CTTGCCTATCATTGACCTCAGCCCCATTGAAATAAGAGCTAGCATTGAAA
TAACACCCTGCCCCACTCACAAGCTTCGGTTAGGTTGATTTCTAGAGCTG
CAATTAGAAGCTCAAAGTGTTAGATTTTCTTTATTATGGTAGATAGGTAG
ATAATACTTGCTTCTTTAGCCAGAACTTATAAAATGCAAGCCACTGGTGA
GGTTGCCATCATTCAGGTGGAGTCTCACATTGTTAGAAAATCAAGGTTCA
CCATTTTCTGTAAGGACCTTAAATAATAAAACAAAACAAAACAAATGGGA
GGTTTTTATTAACTCAGTAGAAGGCTTACAAATTGTAAGATAGTGATTAC
CACTGGAGTCTCATGAGAGGTAGCAG

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTCCCAAAAAGAATTCAGGACTTACTATGGTAGGAGATTTG
GGTTCTGATGATGCTAGTCCAAAAAAATTCTGTGGCTACAGTTCTTACAC
TTGCCTTCTGCCATCTGATTATCTCAAATGCTCCCTGACCTCACTATAAC
TGATTGGAGCCTGTAATCTCAGTTGAGTCAGAACTTCTCAGAGTCCAGCT
TTCACTGTGATCCTGTTATCCCGATATACTGGGTGTGTCAGAGTTCTTGG
CAGTCAAACTTAGGATCCTCTGCAACCTTAAGATCCTGGTGTGACCAAGC
TCCTGTTTTTCTGCCATCCCCACATCCTGGGTGTATTAGAGTACCTGGAA
GTGATACCCCCCCTGGACACTGAGGAGGTGTCCACTGAGTTCAAAACCAA
GGTAGACCAACAGTGACCTGAAGGAATCTGAGCAGCTGGTTGGGCGGTTT
CCTGTTTTCCTGCTCCTGCTGACCCCAGCCCCTCACGATTGTTTTGGAAC
AGATGTTGTGTTCCAGTCACCAGTGATCCCTCACACAGTAATAGTTGGAG
ACTTCAACACCCCACTTTCATCAATGGACAGATCCTGGAAACAGAAACTA
AACAGAGACACCGTGACACTAACAGATGTTATGAAACAAACAGATTTAAC
CGATATCTATAGAACATTTCATCCTTAAAN

Query= MSMg01no291_i13.b1 MSMg01no291_i13.b1 CHROMAT_FILE:
MSMg01no291_i13.b1 PHD_FILE: MSMg01no291_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:21 2005
         (547 letters)



>mm_chr3_35395147_35396093
          Length = 947

 Score = 1019 bits (527), Expect = 0.0
 Identities = 543/549 (98%), Gaps = 2/549 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtaataatgcaatgatacc--atacatatccatctgtgactattaaatatgaaaatatag 58
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gtaataatgcaatgatacctaatacatatccatctgtgactattaaatatgaaaatatag 258

                                                                       
Query: 59  tttggatactattgtaattttcacttgatgaatatactataattcttagtcacttcctta 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tttggatactattgtaattttcacttgatgaatatactataattcttagtcacttcctta 318

                                                                       
Query: 119 ttgatggtcttaaaaagaacttctgtttttacaaccacaaatgatgtggttttaatgctt 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttgatggtcttaaaaagaacttctgtttttacaaccacaaatgatgtggttttaatgctt 378

                                                                       
Query: 179 tgtgtgtgtgctgggaacaggaactcgggtccttgcacatgctaggcacacttgcctatc 238
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 379 tgtgtgtgtgctgggaacaggaactagggtccttgcacatgctaggcacacttgcctatc 438

                                                                       
Query: 239 attgacctcagccccattgaaataagagctagcattgaaataacaccctgccccactcac 298
           |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 439 attgacctcagccccattgaaataagagctagcattgaaataacaccctggcacactcac 498

                                                                       
Query: 299 aagcttcggttaggttgatttctagagctgcaattagaagctcaaagtgttagattttct 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aagcttcggttaggttgatttctagagctgcaattagaagctcaaagtgttagattttct 558

                                                                       
Query: 359 ttattatggtagataggtagataatacttgcttctttagccagaacttataaaatgcaag 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttattatggtagataggtagataatacttgcttctttagccagaacttataaaatgcaag 618

                                                                       
Query: 419 ccactggtgaggttgccatcattcaggtggagtctcacattgttagaaaatcaaggttca 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ccactggtgaggttgccatcattcaggtggagtctcacattgttagaaaatcaaggttca 678

                                                                       
Query: 479 ccattttctgtaaggaccttaaataataaaacaaaacaaaacaaatgggaggtttttatt 538
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 679 ccattttctgtaaggaccttaaataaaaaaacaaaacaaaacaaatgggaggtttttatt 738

                    
Query: 539 aactcagta 547
           |||||||||
Sbjct: 739 aactcagta 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)