BAC Information

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BAC

Clone NameMSMg01-291I16
Chromosome3 (Build37)
Map Location 56,994,130 - 56,994,363
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040139, LOC666585
Downstream geneTm4sf1, LOC383862, Tm4sf4, Wwtr1, Commd2, Gm410, EG623114, Rnf13, LOC675537, Pfn2, EG433594, LOC100040216, 4921539H07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291I16.T7 (MSMg01no291_i16.b1)MSMg01-291I16.TJ (MSMg01no291_i16.g1)
ACCAG420511AG420512
length739743
length of high quality
(start - end)
312 (41 - 352)234 (121 - 354)
definitionCHROMAT_FILE: MSMg01no291_i16.b1 PHD_FILE: MSMg01no291_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:21 2005CHROMAT_FILE: MSMg01no291_i16.g1 PHD_FILE: MSMg01no291_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGA
AGTCCACCTTTTTGACCTCTTTATATATGTTGGATATTAGTCCCCTATCT
GATTTAGGATAGGTAAAGATCCTTTCACAATCTGTTGGTAGTCTTTTTGT
CTTGTTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGTT
CCCATTGATCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTC
AGGAACTTTTCCCCTGTACCCATATCTTTGAGGCTTTTTCCTACTTTCTC
TTCTATAAGTTTCAGCGCCTCTGGTTTTATGTGGAGTTCCTTAATCCACT
TACACCCCACCTTAGTACAAGGAGATAGGAATGGATCAATTCTCATTCTT
CTACATGATAACCGCCAGTTTTGCCAGCACCATTTGTTGAAAATGCTGTC
CTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCATAGATCAAGTGACCAT
AGGTGTGTGGGTTCATCTCTGGGTCTTCAATTCTGTTCCATTGGTCTACT
TGTCTGTCACTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGCA
CCATAGCTTTACGTCAGGCATGGTGATTCCACCATAGGCTCTTTTATCCT
TATGAAGATTTTTTGCTACCCTAGGCTTTTTGTTATTTN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTATTAGTAAAATTAATTATTTTACCTGTT
TGCAAAAGGTTTAACCGCACACGATGTAATTAAGTTCAGTACAGTGTCTG
ACATGTTATAATAGATAAGTAAATATTAGGCTCCTAGAGTCCATAACACT
TCTGAAATCCACTAAGCATCTTTACAGCCATCGTTCTGCCCTTCTATGGG
GCAGTCAGTGTCATTCACATTTCCATATGGCAGGAGGTTATAGTTCTTTC
TTGCTTGAGAAGTCATATTAATATTAGATTACTGGCATTATCAGATACCT
GCCTCTTATTAGGTCATACGTGAGCTCTGAGAGAACTTCCGGAAACAAAT
CAAACCACCCCNCAGATCATAAAAATCAAAAAAATAGTGTGAGCTGTGAC
CAGATGAACGAATTGAGGAATTAACAACAGATCTGTTTGGGGTGGTACAT
TAACAAGATTTTACAAGCCTTAAACTAAATCTGGAGTCCTACCCCATTAT
ACAGCACTAAATTGGTGAGCTTTGGTGCCTTCTGAGGCTTTGTCAGGATG
TTTGTGTCTGATTGGAGAATATTATGCCTACTAGTAATATAGAATATATA
TGCAGAATCCATGAAGTTAGAGTCATTAAAATGCTGATTTCTGATATATT
CCTTAGATTTACAAAATATGAGGAAAACAAGAATTGCAATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_i16.g1 MSMg01no291_i16.g1 CHROMAT_FILE:
MSMg01no291_i16.g1 PHD_FILE: MSMg01no291_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:21 2005
         (234 letters)



>mm_chr3_56993930_56994563
          Length = 634

 Score =  445 bits (230), Expect = e-129
 Identities = 233/234 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acgatgtaattaagttcagtacagtgtctgacatgttataatagataagtaaatattagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acgatgtaattaagttcagtacagtgtctgacatgttataatagataagtaaatattagg 260

                                                                       
Query: 61  ctcctagagtccataacacttctgaaatccactaagcatctttacagccatcgttctgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcctagagtccataacacttctgaaatccactaagcatctttacagccatcgttctgcc 320

                                                                       
Query: 121 cttctatggggcagtcagtgtcattcacatttccatatggcaggaggttatagttctttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 cttctatggggcagtcagtgtcattcacatttccatatggcaggaggttatagttctctc 380

                                                                 
Query: 181 ttgcttgagaagtcatattaatattagattactggcattatcagatacctgcct 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgcttgagaagtcatattaatattagattactggcattatcagatacctgcct 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)