Query= MSMg01no291_o19.b1 MSMg01no291_o19.b1 CHROMAT_FILE:
MSMg01no291_o19.b1 PHD_FILE: MSMg01no291_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:50 2005
(657 letters)
>mm_chr3_41464892_41465948
Length = 1057
Score = 928 bits (480), Expect = 0.0
Identities = 525/544 (96%), Gaps = 9/544 (1%)
Strand = Plus / Minus
Query: 1 gaattatttacgtttttatagaacttataaaaacaaccaaatgttttttcataatttcta 60
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 544 gaattatttacatttttatagaacttataaaaataaccaaatgttttttcataatttcta 485
Query: 61 tttttattaagttttaagttggaatacaaagtaatgcatctagtgagagcgttttcatac 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 484 tttttattaagttttaagttggaatacaaagtaatgcatctagtgagagcgttttcgtac 425
Query: 121 tcataagccatagtactatcttataatttgtttccttcccacactgttctcctccatgtt 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 424 tcataagccatagtactatcttataatttgtttccttcccacactgctctcctccatgtt 365
Query: 181 ccctgtctatcctataattgtttcccttaccacccaccaagtagtatgcatctctgcttt 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ccctgtctatcctataattgtctcccttaccacccaccaagtagtatgcatctctgcttt 305
Query: 241 catatcataggcattctgttacccactctgattctctccctccccaagatattctcctag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 catatcataggcattctgttacccactctgattctctccctccccaagatattctcctag 245
Query: 301 cacccttggaattctgtttccaacacacgcg--cgcacacacaca----ccgcc---ccc 351
||||||||||||||||||||||||||||||| |||||||||||| ||| | ||
Sbjct: 244 cacccttggaattctgtttccaacacacgcgtgcgcacacacacatagaccgactgaccg 185
Query: 352 actgtatctgcaggtaggaataattgtctttctaggtttggcttgcttggcttggcaaga 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 actgtatctgcaggtaggaataattgtctttctaggtttggcttgcttggcttggcaaga 125
Query: 412 tgatttccagttgattcagttcccttcccttcatctttctttattgctgagtaagtgcta 471
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 tgatttccagttaattcagttcccttcccttcatctttctttattgctgagtaagtgcta 65
Query: 472 ctctgttaatgtagcacatcatcattatccatgtgtgtgttggtgaacagctagactggt 531
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 64 ctctgttaatgtaccacatcgtcattatccatgtgtgtgttggtgaacagctagactggt 5
Query: 532 tcca 535
||||
Sbjct: 4 tcca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no291_o19.g1 MSMg01no291_o19.g1 CHROMAT_FILE:
MSMg01no291_o19.g1 PHD_FILE: MSMg01no291_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:50 2005
(338 letters)
>mm_chr3_41273618_41274355
Length = 738
Score = 489 bits (253), Expect = e-143
Identities = 290/307 (94%), Gaps = 10/307 (3%)
Strand = Plus / Plus
Query: 1 aatatagtgctcacagtgacttactatgcacaacatgggaaattttatgaagaaatgaat 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatatagtgctcacagtgacttattatgcacaacatgggaaattttatgaagaaatgaat 260
Query: 61 ggtcaagaggacacgtaagcttgttatgtcacactttccaatttgataaagagtagacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtcaagaggacacgtaagcttgttatgtcacactttccaatttgataaagagtagacag 320
Query: 121 ttataatgtgtatgaatatgtgtatttttaatcatatatatatatatacacacacacaca 180
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 321 ttataatgtgtatgaatatgtgtatttttaatcatatataca------cacacacacaca 374
Query: 181 cacacatatat--gattgacaataaaagaatatggcctaaaattccaggaaagctagggc 238
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 375 cacacatatatatgattgacaataaaagaatatggcctaaagttccaggaaagctagggc 434
Query: 239 tgttacacagaanaa-ccctatctcanaacatganagagagagagagagagagagagaga 297
||||||||||| || |||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 435 tgttacacagag-aagccctatctcaaaacatgagagagagagagagagagagagagaga 493
Query: 298 gggagag 304
| |||||
Sbjct: 494 gagagag 500
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space: 239841
Effective search space used: 239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
