BAC Information

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BAC

Clone NameMSMg01-292A24
Chromosome3 (Build37)
Map Location 141,259,516 - 141,259,977
singlet/doubletsinglet
Overlap geneUnc5c
Upstream geneLOC621343, 4930590L14Rik, Pdha2, LOC100039923
Downstream geneBmpr1b, Gabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3, Gbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292A24.T7 (MSMg01no292_a24.b1)MSMg01-292A24.TJ (MSMg01no292_a24.g1)
ACCAG420888AG420889
length769799
length of high quality
(start - end)		591 (46 - 636)247 (76 - 322)
definitionCHROMAT_FILE: MSMg01no292_a24.b1 PHD_FILE: MSMg01no292_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:01 2005CHROMAT_FILE: MSMg01no292_a24.g1 PHD_FILE: MSMg01no292_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTACTACCTGATTATTCTAAATATCCATGTCATATGATCAGAGTT
CTCGTCTTCCCACATTCTAAGCAGTGTCTTCTCACCCTGTCTCTATGCAG
CAAGGACCCTGCTGGGCTTGTTTAGCCAGAATCCTGTTTATGTCTGGGGT
GTTCCTCATAATAATTTTAGTAATTTTCCACCCACTACCCTCATATTGAA
CCCTGCTGTGATGCCCACATTTCCATGCTGGGTTGCAATGGACCCCAGGT
TTTTCCTTGCTGCAAGAAAGAACCTATTGACCTGCTTCCTAAGATCTTAT
CACAGCTCTGAATAAAGTCTTCCTGCAACTGCCATTGGCCATTTTAACAT
TAGTCATGTCTTAATCTCCACAATTCCAAAATATATTATAATGATGACCT
TCGAGTTACTCAGTGAAAGAATAAGCAGAATTTATAGCTTCCTGGCCTGA
ACTCGACTTTCTAAAATCTAACCTTGGAGGAAGACGCTGAGAGCACAGAT
GATAGCTCTCCTCCCTGACCCCCTGTGTCTTAGAAAACCAAGCTAGCCAG
AAAATCAACCAAGTGGCTGTAAACTAAACTGAACATCCTAATCACTTGGT
AGTGAATTTCCCACTTCTTCCTTTGGTTTAGATCTCGGCGAGAATTTGTA
TTATCAGCCGGAATCTAATGGATAATTGTATGGATTAATGTCCCCTTGCG
CAACTTTATTTTTTAAAAG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATAAAATGTTAATTGCATTTTTAT
TTATGTTTTGACCCATTACATTTCATTGAGAGTTATTCATGAATATATAA
CCTTCTGTTTCTCTTGTTGTTGATATCCAGCTTTAATGCATGGTAGTCTG
ATAGGATGCTGGGAGTTATTTCAATTCCTTGGATCTGTTTAGACTTTCTT
TGTGTCTGAATATGTGGTCAGCTTTGGAGAATGTTCCATGAGATGCAGAG
TAGGAAGTATATTCTTTTGTGTTTGTGTGGAATATTCTATAAATATCGGC
TAAGCCCACCCGTTTTATTTTTTCCCCCCCCCCCCCCCCTTTTTGTTTTT
TTTTAGCAAGAAAGACTCCCCCCCCCTCCAAAAAAAAAATAATTCCCCCC
CCGTGGCGGCCTTTCTATTCTCCCTTATCTATTCCTTTACCCCTTTTACG
CATCTATCTAACCCCTCTTTTCCCCCCCCTTTCCTACTCCTCTTCAATTC
TTTTCCTATTATCCCATCTCTTTCTTTTCCCACCATTCTTTCCACCTAAT
CTCATTATTTTCTTTCTCTCCCCGCCACCTCTTCCTCCTTTCTTCCATTT
ATTTTTTCCACCCCCCTTCTCTTTCTTTCCACTCCCTTCTTTACCTCTCT
CAACATCTCTGTTCTTTTCTCTGTTTTTCCCTCACTCTCTCCTTCCGTCT
CCTCATCTCTTCTTCTCCTTCTCTTTTTCTTTTTCCCCCCTTTATATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_a24.b1 MSMg01no292_a24.b1 CHROMAT_FILE:
MSMg01no292_a24.b1 PHD_FILE: MSMg01no292_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:01 2005
         (591 letters)



>mm_chr3_141258987_141259977
          Length = 991

 Score =  878 bits (454), Expect = 0.0
 Identities = 460/462 (99%)
 Strand = Plus / Minus

                                                                       
Query: 130 gccagaatcctgtttatgtctggggtgttcctcataataattttagtaattttccaccca 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991 gccagaatcctgtttatgtctggggtgttcctcataataattttagtaattttccaccca 932

                                                                       
Query: 190 ctaccctcatattgaaccctgctgtgatgcccacatttccatgctgggttgcaatggacc 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 ctaccctcatattgaaccctgctgtgatgcccacatttccatgctgggttgcaatggacc 872

                                                                       
Query: 250 ccaggtttttccttgctgcaagaaagaacctattgacctgcttcctaagatcttatcaca 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 ccaggtttttccttgctgcaagaaagaacctattgacctgcttcctaagatcttatcaca 812

                                                                       
Query: 310 gctctgaataaagtcttcctgcaactgccattggccattttaacattagtcatgtcttaa 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 gctctgaataaagtcttcctgcaactgccattggccattttaacattagtcatgtcttaa 752

                                                                       
Query: 370 tctccacaattccaaaatatattataatgatgaccttcgagttactcagtgaaagaataa 429
           ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 tcttcaaaattccaaaatatattataatgatgaccttcgagttactcagtgaaagaataa 692

                                                                       
Query: 430 gcagaatttatagcttcctggcctgaactcgactttctaaaatctaaccttggaggaaga 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 gcagaatttatagcttcctggcctgaactcgactttctaaaatctaaccttggaggaaga 632

                                                                       
Query: 490 cgctgagagcacagatgatagctctcctccctgaccccctgtgtcttagaaaaccaagct 549
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 cgctgagagcacagatgatagctctcctccctgaccccctgtgtcttagaaaaccaagct 572

                                                     
Query: 550 agccagaaaatcaaccaagtggctgtaaactaaactgaacat 591
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 agccagaaaatcaaccaagtggctgtaaactaaactgaacat 530


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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