BAC Information

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BAC

Clone NameMSMg01-292E01
Chromosome3 (Build37)
Map Location 44,798,280 - 44,798,632
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282, LOC433580, LOC671801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292E01.T7 (MSMg01no292_e01.b1)MSMg01-292E01.TJ (MSMg01no292_e01.g1)
ACCAG421022AG421023
length754824
length of high quality
(start - end)
369 (37 - 405)33 (78 - 110)
definitionCHROMAT_FILE: MSMg01no292_e01.b1 PHD_FILE: MSMg01no292_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:16 2005CHROMAT_FILE: MSMg01no292_e01.g1 PHD_FILE: MSMg01no292_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGT
AATGGCTTAAATGTTTCATCCATCCAAGTTATTTTAAAATGAAAGTATCT
GTAATGCATTTTTTTTCAATGTGCAAAATTTGACATTATTGGTTTTTTAA
ATGCATTGAAAGAGTTTAATTCTAAAGGTAAATTGTTTTTTTGTATTATA
ATATTAAATAGTAGAACATAAAATGTAATTTATAAATAAGAATATATTAA
AGTAGGGAAATAATTACTACAGTTAATGCAGAAAATAATTGTATTCAGAA
TTTTCAACTTTTACTACAAAAAGTCAAATATTTTGAAATTAAATTCATAA
AATAAACACATTTGTTTGTGTGTGAATATGCATGTATATGCACTCCTGTG
AGTTTTCTCCCCCCACCCAAGATGAAATTTTTTTTTTAATTTCCCTTTTT
TCCCCTTTATAACTAATAAAATAATTTACTTATACTCTTCTTCTTTTTCA
TAACTCGCTCTATCTTTTACTTCTTACCTCCTTTTTAACTACTCTCTTCT
AATTCACACTTTCTTCCCCTCTTCTTATCTCTTTTTTCTTCTTCCTCTTA
TTTTTTCTTTTTTGATCCTCCTTTTCTACTAACCCATTATCCACATTCTA
TCATTTTCTCCCCCCATTATTTTCTTCACATAAACTTATTAAATTTGCAT
CTCATTCATTTTTTTTTTTTTTTTTCTCCTTTTTTTCCTTTTAATTTCCT
CCTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTACTTTGTTGTTGTTTTTGGTG
GTGGTGGTGGTGNAATTTTTTTCCCCCCATATGTAGGTAAGTATTACAAT
TTTTCGTAGACTCCTATTCTGTTTATTATTTCTCGCGTTCGACGCGGACC
ACATTACCGCTGTCCCTTTCCCCCTATTGCGCTCTTTTCCCCCTTTTTTC
CTCTTCATTTTCTTGTCCTTTTTTTTTACCAATACATTATTCCTCTCTTC
CCCGTACCTCCTCTCTCCTTTCCTCCCTCTTTTTTTTTCACCCCCTTCGC
GATGCCTCTTCACCTCCTTCTTTTTTTTTTTTTCCCCCCCCCCCCCCCCC
AACTTTTTTTAACTATGCCTCGCTCTCCTTTGCCGGACAGCCCCCAAAAA
AAAAAAAAAAGTGTCCTGGGTTGGGGGTGTGTCCCACTTATTCTTAATCC
CTACCTCCTCCTTATCTATTTTTCTTATATTTTTACCCCCTTCTCTTTTT
TATCCTCCCTACACTCTAATTTCAGATCCTTTATATTTTTTTCTTCTAAC
CCTCCCCCCCCTTGCCCGCTCCTCCCCCCATCTCCCCCTTTTTTATCCCA
CTTTTTTATATTTCACCCCCTTTCTCACCCCTTTCCCCGTCGTCTTTCCT
TTCTCTTTTTTTTTTTCTTCCTTACTCCCCTTCTCATTTCACTCCCATCT
GGCCTCATAACTCTATTATCTAAATGATGGATCTTACAGCATTTTTTGTC
ACATTCTTTTACCGCCTCCCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_e01.b1 MSMg01no292_e01.b1 CHROMAT_FILE:
MSMg01no292_e01.b1 PHD_FILE: MSMg01no292_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:16 2005
         (369 letters)



>mm_chr3_44797865_44798632
          Length = 768

 Score =  592 bits (306), Expect = e-173
 Identities = 343/356 (96%), Gaps = 5/356 (1%)
 Strand = Plus / Minus

                                                                       
Query: 14  taatggcttaaatgtttcatccatccaagttattttaaaatgaaagtatctgtaatgcat 73
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| 
Sbjct: 768 taatggcttaaatgtttcatccatccaagttattttaaaatgaaagtatctataatgca- 710

                                                                       
Query: 74  tttttttcaatgtgcaaaatttgacattattggttttttaaatgcattgaaagagtttaa 133
            |||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||
Sbjct: 709 -ttttttcaatgtgcaaaattcgacattattggtattttaaatgcactgaaagagtttaa 651

                                                                       
Query: 134 -ttctaaaggtaaattgtttttttgtattataatatt-aaatagtagaacataaaatgta 191
            |||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 650 gttctaaagataaattggttttttgtattataatattaaaatagtagaacataaaatgta 591

                                                                       
Query: 192 atttataaataagaatatattaaagtagggaaataattactacagttaatgcagaaaata 251
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 590 atttataaataagaatatattaaagtagggaaataattactacaggtaatgcagaaaata 531

                                                                       
Query: 252 attgtattcagaattttcaacttttactacaaaaagtcaaatattttgaaattaaattca 311
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 attgtattcagaa-tttcaacttttactacaaaaagtcaaatattttgaaattaaattca 472

                                                                   
Query: 312 taaaataaacacatttgtttgtgtgtgaatatgcatgtatatgcactcctgtgagt 367
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 471 taaaataaacacatttgtttgtgtgtgaatatgcatgtgtatgcactcctgtgagt 416


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 768
Length adjustment: 9
Effective length of query: 360
Effective length of database: 759
Effective search space:   273240
Effective search space used:   273240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)