CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTATTTGTATCCTAGGATAGTTATTTAACACTTGTCAGCCAAAA
AAAAAAAAAATCAATAAATTGTGCTCTGTTCTAGTACTCTTTTTCTAAAC
ATAATAGTTTTATTAATTATTTAGGAGTTTCATAAAATCCACCCATATCA
TGTTTGCTTCCTATTCTTTCCAGGTCCACCCTTGTGCTACATCCTCCCCC
CCAAGATAGCAAACAAACAAACCCAGAAAGTCAATTTTATGTTGCCTATA
TACTCACAGGAGCATTGTCAAGTTCCCAGTGGCCAGCCCTTTGAAAATAA
CTGAATCCTTCCCCACTCCACTGCCAGAAACCATCAACTGTGAAGAAAGA
GCTATACTTCATCATCTCCACCACATTTTTTAATGACTCACTTCAATGGT
TTCCTGTCTGGACTGTTTCATTTTTCATATTTTTGTTTGTTTGTTTGTTT
GTTTGGNAGGAGAGGTTGTTTGTTATTTCTTNNATGTTTATTTTTTTTTT
GTATGTNNTTTGNNTTTTTTTTTTGGTTTGGTTNNTTNGANTATTATTGT
TTGTTTATAATTTATTATAAAAATTGTATTTTAGTGTTTATTGTTTATAT
TTTTTGAGTGGTAGTAAAATATACAAATTTTAAATTCAACTTTTTGTTAT
ATACCATTTTATGTCACTTTTATTCGATTTCTCTCCGTTTCAAACCATTA
ATGGTATTTACTTCTC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCAGCTTATTATGATTTCTCCTG
ATCTGTTGCACATGAATATTCTCACACATTTCCTTTGCTTTTCAGAAACT
ATTAAAGAAGTGAGAATAAGATGAACTAGGCTCCTGTTTGTTCCCTTATG
CAACGGTCAGGCAAAGTTTCAGGTATTTATCCTGATGTAAATTATCAGCA
GGAGCATCTCAGGAAGCAGTTAATGAAGAATATAATTTTAGCATCAGAAT
ATAATCAGTTATGATAAATATTTTCAATATATATTATGTTTTCAAACTCC
CTAACAATGGTGTAGTCACCAATAGGTGTAAACAACCTTAAGGAAGCAGT
GTGAAGACAGAACAGCACACACAATTAAGCCCAGACAGTTATCTTTATGA
AGCCTATTAAAGCAAAAAATAGAAACTTTCTTGTGTGGTCAAATTGTTAT
CTTTCATTAAATTTGAATATATCATCTTCTTTTTAAGTTCTACAATCATT
CGGAGCAAAGTCTGCCTTTAGTCCCTGCTGAATTAAATATTTACACACTC
GCAGCGCATATGCAGAAATGAAGCAACATTTACTCCAGCTTACTGAGAAA
AAGATTCACCTCTAGAAGAATGCAATTGCCATTGTGAGGCAGAGGTTGTG
ATGCCCATTAAAATGGCTTTGAGGGCCTTGTAAATGGCCTAACAACCACC

Query= MSMg01no292_l21.g1 MSMg01no292_l21.g1 CHROMAT_FILE:
MSMg01no292_l21.g1 PHD_FILE: MSMg01no292_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:53 2005
         (573 letters)



>mm_chr3_15039597_15040570
          Length = 974

 Score =  978 bits (506), Expect = 0.0
 Identities = 557/574 (97%), Gaps = 1/574 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcagcttattatgatttctcctgatctgttgcacatgaatattctcacacatttccttt 60
           |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 201 atcagcttattatgatttctcctgatgtgttgcacatgaatattctcaaacatttccttt 260

                                                                       
Query: 61  gcttttcagaaactattaaagaagtgagaataagatgaactaggctcctgtttgttccct 120
            |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 ccttttcagaaactattaatgaagtgagaataagatgaactaggctcctgtttgttcccg 320

                                                                       
Query: 121 tatgcaacggtcaggcaaagtttcaggtatttatcctgatgtaaattatcagcaggagca 180
           | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgcaacggtcaggcaaagtttcaggaatttatcctgatgtaaattatcagcaggagca 380

                                                                       
Query: 181 tctcaggaagcagttaatgaagaatataattttagcatcagaatataatcagttatgata 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 tctcaggaagcagttaatgaagaatatgattttagcatcagaatataatcagttatgata 440

                                                                       
Query: 241 aatattttcaatatatattatgttttcaaactccctaacaatggtgtagtcaccaatagg 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 aatattttcaatatatattatgttttcaaactccctaacaatggtgtactcaccaatagg 500

                                                                       
Query: 301 tgtaaacaaccttaaggaagcagtgtgaagacagaacagcacacacaattaagcccagac 360
           ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 501 tgtaaacaaccttaaggaagcagtgtgaagacagaacagcagacagaattaagcccagac 560

                                                                       
Query: 361 agttatctttatgaagcctattaaagca-aaaaatagaaactttcttgtgtggtcaaatt 419
           |||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 561 agttatctttatgatgcctattaaagcggaaaaatagaaactttcttgtgtggtcaaatt 620

                                                                       
Query: 420 gttatctttcattaaatttgaatatatcatcttctttttaagttctacaatcattcggag 479
           ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 621 gttatctttcattaaatttgaatatatcatcttctttgtaagtcctacaatcattcggag 680

                                                                       
Query: 480 caaagtctgcctttagtccctgctgaattaaatatttacacactcgcagcgcatatgcag 539
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 681 caaagtctgcctttagtccctgctgaattaaatatttacacactcgcagcacatatgcag 740

                                             
Query: 540 aaatgaagcaacatttactccagcttactgagaa 573
           ||||||||||||||||||||||||||||||||||
Sbjct: 741 aaatgaagcaacatttactccagcttactgagaa 774


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 974
Length adjustment: 10
Effective length of query: 563
Effective length of database: 964
Effective search space:   542732
Effective search space used:   542732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)