BAC Information

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BAC

Clone NameMSMg01-292M10
Chromosome3 (Build37)
Map Location 146,253,443 - 146,397,292
singlet/doubletdoublet
Overlap geneDnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb
Upstream gene2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473
Downstream geneLOC100040540, Ttll7, Ppia-ps3_1528.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292M10.T7 (MSMg01no292_m10.b1)MSMg01-292M10.TJ (MSMg01no292_m10.g1)
ACCAG421405AG421406
length762784
length of high quality
(start - end)
297 (53 - 349)240 (75 - 314)
definitionCHROMAT_FILE: MSMg01no292_m10.b1 PHD_FILE: MSMg01no292_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:56 2005CHROMAT_FILE: MSMg01no292_m10.g1 PHD_FILE: MSMg01no292_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,396,999 - 146,397,292)(146,253,443 - 146,253,682)
sequence
GCGGCCGCTATACGACTCCTATATCGGAGAGGATCCGCGGAATTCACAGG
TATCACGGAAAGTTGAGGAAGACTAGATCAGTAGGTCCTGGTTCCTATCC
GGATAACTTGCTGAGGGGACCTGTGTTGACACTAGGTGTCTTCCAGCTCC
TTCCTTCCTTCTCATCCTTGTAGTCCACCTGGCTGTGACCTCAGTGGCAA
GCTTCAGTCTTCCCTCACATTTGCTGCTTGGCATACATCCCCTTCAGTGC
CTTACTATACATGGCAGAACACTGAGAAAGAGTCTGCTTGACACCTCTTC
CTTCCTGTACTGAGAGATCTAATGTTTTTATTGTTACATTATTGTTTTTT
TGTTTGACCCCCCCCCCCCTTATATCCTTACTAGTACTAAACTGTCATAC
TTCCCCCTCTAATATAAAAAAAATACCATTCCTCTGGCGTTATTCCTATG
TCCCCTAGCATTGCGCAGTTTTAACGCCCCCATGTGGATGCTGCTGTCCT
TACAACATTATGTGCATTCGTTCCTTGTCATTCTTATCTCCCAACAAAGT
ATTTTCTCTTTCTTCCACCCCTGCTTTATAAAATGTACTTTCTCCCGTTA
TCACCATTCCTTCTTATATTCCGTTACTCTTTACCTCCCCCCCTTCTTCC
CCTTTCATCTTTTTACCCCCCCCTTTTTCCTTTTCTCTCTCCTCTTTCGT
ATACCGCCCCTATGATTTTACGTCTTACTTCCCACACATCTATTACCTAT
TCCTTCTTTTTA
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGACAGTTACCCTGTGCTGACATCTA
CTGTGATAACAAGGCCGTGTGTATGCCTTTTGGGTGCCTCGTGGTAGGAT
GACCTGGTGAGGAGATTTAGTCTTACAATAGATGACATCTATTATTACAA
CCGTGAGTGTAGCAGACAGCTATGGCAGAGATGGTACTGATAAATAGAGT
TGGCAGGATAGACTGGTGGCCTATAGCTGTAAGTAGATCATGAGTTCAAG
ACTAGCTGACTAGACTAGGCTCATACAATGTGTGTGTCTCTGGCGCTGCA
TTTGACTGTTTTTTTTCTTCCCCCCCCCCCCCCATTGATTTTTTTCCTGC
GCCACGCTTTTTTCCCCCCCCTTTTCATAAATAAATAATACCCTTTTCGC
TGGCTTTTTTTTTTCCTTTTTTTTTTATTTTTTTCCCTTTTCTACCTTTT
CCCCTCCCCTTCTTTTTTCACCCTCTTACTCATATTCTTCTTCCCGCTCT
CTTTTTTTTACTCCTTTTATTTATTCTGTCTTTTTTTTCTCTCCCTTTTT
GTTTTTTTTTCTTCCCCACCCATTTTTGCTTTTCTTTTTCTTCTCTTTTT
CTCCTCCCCCTTCTCTCTTCTTCTCCTCTCTTTTTTAAGACGTAAACTCT
TGTTCTTTATCTCTTCTTTCTCTCCTCTCCCTCTCTCTTCTTCATTATTT
TTCTTGTTTTTTTTCTATTCCCTCCCTTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_m10.b1 MSMg01no292_m10.b1 CHROMAT_FILE:
MSMg01no292_m10.b1 PHD_FILE: MSMg01no292_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:56 2005
         (297 letters)



>mm_chr3_146396799_146397495
          Length = 697

 Score =  514 bits (266), Expect = e-150
 Identities = 287/294 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacggaaagttgaggaagactagatcagtaggtcctggttcctatccggataacttgct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 494 tcacggaaagttgaggaagactagatcagtaggtcctggttcctatccggataacttggt 435

                                                                       
Query: 61  gaggggacctgtgttgacactaggtgtcttccagctccttccttccttctcatccttgta 120
           ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 434 gagggaacctgggttgacactaggtgtcttccagctccttccttccttctcatccttgca 375

                                                                       
Query: 121 gtccacctggctgtgacctcagtggcaagcttcagtcttccctcacatttgctgcttggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gtccacctggctgtgacctcagtggcaagcttcagtcttccctcacatttgctgcttggc 315

                                                                       
Query: 181 atacatccccttcagtgccttactatacatggcagaacactgagaaagagtctgcttgac 240
           ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 314 atacatccccttcagtgccttactatacacggcagaacactgggaaagagtctgcttgac 255

                                                                 
Query: 241 acctcttccttcctgtactgagagatctaatgtttttattgttacattattgtt 294
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 254 acctcttccttcctggactgagagatctaatgtttttattgttacattattgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no292_m10.g1 MSMg01no292_m10.g1 CHROMAT_FILE:
MSMg01no292_m10.g1 PHD_FILE: MSMg01no292_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:56 2005
         (240 letters)



>mm_chr3_146253243_146253882
          Length = 640

 Score =  449 bits (232), Expect = e-131
 Identities = 238/240 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgacagttaccctgtgctgacatctactgtgataacaaggccgtgtgtatgccttttggg 60
           |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 201 tgacagttaccctgtgctgacatcgactgtggtaacaaggccgtgtgtatgccttttggg 260

                                                                       
Query: 61  tgcctcgtggtaggatgacctggtgaggagatttagtcttacaatagatgacatctatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcctcgtggtaggatgacctggtgaggagatttagtcttacaatagatgacatctatta 320

                                                                       
Query: 121 ttacaaccgtgagtgtagcagacagctatggcagagatggtactgataaatagagttggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttacaaccgtgagtgtagcagacagctatggcagagatggtactgataaatagagttggc 380

                                                                       
Query: 181 aggatagactggtggcctatagctgtaagtagatcatgagttcaagactagctgactaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggatagactggtggcctatagctgtaagtagatcatgagttcaagactagctgactaga 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)