BAC Information

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BAC

Clone NameMSMg01-292N23
Chromosome3 (Build37)
Map Location 125,029,402 - 125,029,623
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817, LOC668820
Downstream geneNdst4, Ugt8a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292N23.T7 (MSMg01no292_n23.b1)MSMg01-292N23.TJ (MSMg01no292_n23.g1)
ACCAG421475AG421476
length739749
length of high quality
(start - end)
371 (44 - 414)285 (78 - 362)
definitionCHROMAT_FILE: MSMg01no292_n23.b1 PHD_FILE: MSMg01no292_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:04 2005CHROMAT_FILE: MSMg01no292_n23.g1 PHD_FILE: MSMg01no292_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTGGGTACTGCTGGCTTCTACAGACTCTAGATACCTAGGTTGGCGAC
CTTAGCTGCCCAGTTGTACCCCCTAACCAAAGAAGGGGAGGTGTCTGTGT
GGACCCCAGATCACCAGAAAGCCTTTAAAGTGATTAAAAAGGCCCTACTG
ATGGCCAGCCTATGCCTGACCTAACCAAGCCTTTCACTCTTTATGTGAAA
GAGAGAGCAGGGGTCACCAGAGGAGTCCTTACTCAGACTTTGGGACTTTG
AAAAAGGCCAGTGACTTACCTATCCAAAAAGTTACACCCTGTTGCCAGTA
GGTGGTTTTCTTGCCTGAAAGCTATTGCTGCCATAATCTGCTTGTCAAGG
ATGCTGATAAGCTCACCCCGGGACAGCAAATAACTGTAGTGGCATCCCAC
ACTCTTAAAAGCATTACCAACGCTCCTGTGACACATCAGAGCTTTTTGTT
GTCTAAATGAGTGACCTTCGCTTCATTCCACCTGCTGTCCCACTGTGTGA
GACTGCACCTACTCATCACTGCACTGACATTCTGGCATAAGATATGATCT
GAATTATCAGATCAGCCTTGGCCTGAGGGTACGAGCTGGTACACTGATGA
CAGTAGCCTCGAGGTTAACGCAATGCAAACGCGTTTACTGTACAATGCTG
GTGAATACAACAGCTGTGATCTTTCCCTGCTCCCTTTTG
NCAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTAGGTTATATGTAAATATTTC
TGCATTTGTGTGTGTGTGTGTGTGCCGTGTGTGTCGTGTGAGAGTGAATG
GAATTTGGGGCACAAAAATGCATACCTTTTATTATCATTATTATTTGGAG
GGAGAAGAACATGAATATATCTTGATAGATATGTATAAATATATGAGCTC
TGGGTTTTAGGAATGATTTAAAACTCTGATTTGATCATGTCCTCTCTTGT
AGAAGTAGTTATTCAATAAAGCCTCATAAAAAGGATAGGAAATAACTGGT
GCTTCAAGGATATGTATTTTTCAAACCCACCCCCCCCAAATGGCTAATCT
CAAGAAAAGATGTGTGTCCCCCCCCACTAAAAACAGAAATGCCACCCTGC
CTGTGAGCATGAAATAATGGGAGACAGTATTAAGACATGTACAAATTAAC
TCTTACCCTTACTTCAGCCCCAACTATAGGACAGATAACTTGAAACTGTC
TATACATAACAAAGCATGAATTTTACATCTGATGAACAATACTGCCACGG
GGACCCATAAAATTGCAAAACCTCCCCCTGATCTTTCTCCACAACATGCC
CCCCTCCCCTACCACCACTCCTGCCCCTCTTTCCCCTCATTACCCTTACT
CTTATACCCCTAATACTCTACCCTAATCTTAATTCCCCTTCCTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_n23.g1 MSMg01no292_n23.g1 CHROMAT_FILE:
MSMg01no292_n23.g1 PHD_FILE: MSMg01no292_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:04 2005
         (285 letters)



>mm_chr3_125029138_125029823
          Length = 686

 Score =  389 bits (201), Expect = e-112
 Identities = 217/223 (97%), Gaps = 3/223 (1%)
 Strand = Plus / Minus

                                                                       
Query: 65  gagtgaatggaatttggggcacaaaaatgcataccttttattatcattattatttggagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gagtgaatggaatttggggcacaaaaatgcataccttttattatcattattatttggagg 427

                                                                       
Query: 125 gagaagaacatgaatatatcttgatagatatgtataaatatatgagctctgggttttagg 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 426 gagaagaacatgaatatatcttgatagatatgtataaatatatgagctctgggtttaag- 368

                                                                       
Query: 185 aatgatttaaaactctg--atttgatcatgtcctctcttgtagaagtagttattcaataa 242
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aatgatttaaaactctgtgatttgatcatgtcctctcttgtagaagtagttattcaataa 308

                                                      
Query: 243 agcctcataaaaaggataggaaataactggtgcttcaaggata 285
           ||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 307 agcctcagaaaaaggatagaaaataactggtgcttcaaggata 265


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 686
Length adjustment: 9
Effective length of query: 276
Effective length of database: 677
Effective search space:   186852
Effective search space used:   186852
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)