BAC Information

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BAC

Clone NameMSMg01-293A03
Chromosome3 (Build37)
Map Location 126,243,508 - 126,243,693
singlet/doubletsinglet
Overlap genenone
Upstream geneNdst4, Ugt8a, Arsj
Downstream geneCamk2d, Ank2, LOC100043749, LOC100043361, LOC100043364, Larp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293A03.T7 (MSMg01no293_a03.b1)MSMg01-293A03.TJ (MSMg01no293_a03.g1)
ACCAG421570AG421571
length539544
length of high quality
(start - end)
317 (57 - 373)178 (95 - 272)
definitionCHROMAT_FILE: MSMg01no293_a03.b1 PHD_FILE: MSMg01no293_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:15 2005CHROMAT_FILE: MSMg01no293_a03.g1 PHD_FILE: MSMg01no293_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTNNNCACATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCCATGGTGTGAGTGCCGAAATCACTAAAAATATAT
TTTTTTATTCTTAGGTATTTATTTCATTTACATTTCCACATGCTATCCCA
AAAGTCTCACACACTCACTCTCCCACCCACCCACTCCCAACTCTTGGCCC
TGGCGATCCCCTGTACTGAGATATATAATGCCTGCACAACCAATGGGCCT
CTTTTTCCAGTGATGGCTGACTAGGCCATCTTCTGATACATATGCAGCTA
GAGACACGAGCTCTGGGGGGGGGGGTTACTGGTTAGTTCATATTATTGTT
CCACCTATAGGGTTGCAGATCCCCCTTTTTTCCTGGCCACTCCCTCCAGN
TCCTCCATTGTGGGGCCCTGTGTATTCATCCCAACCCACCTGCAATAGAA
AAAACAATACCACCTTTCCTTGGCGGTGTTTGGCTTAAAGGTCCCCCGTG
GGTCCCAATTAGGTCCCCTTCTCCCCCCAAAGGCGAAGA
TCCCTTCTCNNNNNNCCTTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTC
TGAGTTTCCCTCTCACATTTTCTGCTTGTCGTTTCTAGTGACATTTCTTG
GGGGGGAAAATCTGGCAAGGATAAAGTTCAACATACGAAAGCTACGTGAA
GACTGTGTTAGTCTTTTAGAAATGGACCAACATTCCCTTCTGGAGGAAGA
CCTCCTTCCTTGCTGTTTGTCAACATCATGTCACGAGCTGTTTTCCTTCA
TCCCAAGAGTGAGGGAAATATGAACCTCCTTTCGGCAGCATTTCACGATT
GGTTTGCACACGCCAAGCTGCCTACATGTTCCATTTTTTTTTTTCCCCCC
CCCCCCCCCCTGAATAGCGCATGACTCCTATGTCATTACCCACCATTTTC
TTCTACCCCGCATTGCAACTTGTTTAATATTTCCCTTATTCGCCCCCCTT
TTGTTCTCCAATCTTTTTCTCTCTATAAATATCCTTTCGCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_a03.g1 MSMg01no293_a03.g1 CHROMAT_FILE:
MSMg01no293_a03.g1 PHD_FILE: MSMg01no293_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:15 2005
         (178 letters)



>mm_chr3_126243253_126243830
          Length = 578

 Score =  296 bits (153), Expect = 5e-85
 Identities = 175/187 (93%), Gaps = 10/187 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctctgagtttccctctcacattttctgcttgtcgtttctagtgacatttctt----- 55
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 441 tttctctgagtttccctctcacattttctgcttgtcgtttctagtgacatttcttggggg 382

                                                                       
Query: 56  ---gggggggaaaatctggcaaggataaagttcaacatacgaaagctacgtgaagactgt 112
              ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 gggggggggggaaatctggcaaggataaagttcaacatacgaaagctacgtgatgactgt 322

                                                                       
Query: 113 gttagtcttttagaaatggaccaacattcccttctggaggaagacctccttc-cttgctg 171
           |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 321 gttagtcttttagaaatggaccaacattcccttctggaggaagacctcct-cacttgctg 263

                  
Query: 172 tttgtca 178
           |||||||
Sbjct: 262 tttgtca 256


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 178
Length of database: 578
Length adjustment: 8
Effective length of query: 170
Effective length of database: 570
Effective search space:    96900
Effective search space used:    96900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)