Query= MSMg01no293_b07.b1 MSMg01no293_b07.b1 CHROMAT_FILE:
MSMg01no293_b07.b1 PHD_FILE: MSMg01no293_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:22 2005
(701 letters)
>mm_chr3_120911344_120912444
Length = 1101
Score = 1168 bits (604), Expect = 0.0
Identities = 687/746 (92%), Gaps = 49/746 (6%)
Strand = Plus / Plus
Query: 5 gaattccaggccaggctggtcaacatagcaaatgacagcacagccagagcttcacaagaa 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 gaattccaggccaggctagtcaacatagcaaatgacagcacagccagagcttcacaagaa 215
Query: 65 atcatgtctcaaaaaacaaacaaataaaattttcactttggaagagaagaaaaagacaca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atcatgtctcaaaaaacaaacaaataaaattttcactttggaagagaagaaaaagacaca 275
Query: 125 gtgggtgaaaatacagcattaatatgtaataaaataccatatctaaaatagtaagggctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gtgggtgaaaatacagcattaatatgtaataaaataccatatctaaaatagtaagggctg 335
Query: 185 gagagatggctcagcagttaagagcactgactgttcttccagaggtcctgagttcaattc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gagagatggctcagcagttaagagcactgactgttcttccagaggtcctgagttcaattc 395
Query: 245 ccagcaaccacatggtggctcaaaccatctgtaatgggattccatgccctcttctggtgt 304
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ccaacaaccacatggtggctcaaaccatctgtaatgggattccatgccctcttctggtgt 455
Query: 305 gtctgaagacagtgacagtgtacttatataaaacaatctttatctctagcaaatgtaaat 364
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 456 gtctgaagacagtgacagtgtacttatataaaacaatctttatctctaacaaatgtaaat 515
Query: 365 cttt-aaaaaaataaaatgcttaaaagtcaacagtatggaaacaatctatttcta----- 418
|||| ||||||||||||| |||| ||| |||||||||||||||||||||||||||
Sbjct: 516 cttttaaaaaaataaaatacttagaagccaacagtatggaaacaatctatttctacactt 575
Query: 419 -------------------------------------------acacgggtaaatgattg 435
|||||||||||||||||
Sbjct: 576 gatcttagccaaaaggccgagaagcgataacaatctatttctaacacgggtaaatgattg 635
Query: 436 taaacatcccattacaggatacccagcacatggagatggagagtgaacatataagcccag 495
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 636 taaacatcccattacaggagacccagcacatggagatagagagtgaacatataagcccag 695
Query: 496 tggcacatgcaggaggttcagactggctcatatttgagcctgggtagtttgtgacaagtc 555
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 tggcacatgcaggaggttgagactggctcatatttgagcctgggtagtttgtgacaagtc 755
Query: 556 tgagcagtgtggttggcccttttcccaaaaacaagtacagaaccaccaccatcccccatc 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 tgagcagtgtggttggcccttttcccaaaaacaagtacagaaccaccaccatcccccatc 815
Query: 616 atgctgaaagatcaaaatcaaacatgctcaacactgtctgtcactaggaaaatatcaaga 675
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 816 atgctgaaagatcaaaatcaaatatgctcaacactgtctgtcactaggaaaatatcaaga 875
Query: 676 tggagacagatatagccactttagaa 701
||||||||||||||||||||||||||
Sbjct: 876 tggagacagatatagccactttagaa 901
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space: 753881
Effective search space used: 753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no293_b07.g1 MSMg01no293_b07.g1 CHROMAT_FILE:
MSMg01no293_b07.g1 PHD_FILE: MSMg01no293_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:22 2005
(696 letters)
>mm_chr3_121062605_121063704
Length = 1100
Score = 1284 bits (664), Expect = 0.0
Identities = 690/700 (98%), Gaps = 4/700 (0%)
Strand = Plus / Minus
Query: 1 tgctaatatctacaggaagccaccaattttaaataaactggctgactaatctaacaagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 tgctaatatctacaggaagccaccaattttaaataaactggctgactaatctaacaagag 841
Query: 61 aaataacagtcccaatcacagaacaattgcagaaatgtttattggtctttgaagaaatgg 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 840 aaataacagtcccaatcacagaacaactgcagaaatgtttattggtctttgaagaaatgg 781
Query: 121 gaggaatcttattcacagacttatttgcaagataatttattattgcttgagaaaaagtat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 gaggaatcttattcacagacttatttgcaagataatttattattgcttgagaaaaagtat 721
Query: 181 ttaatacaatatctttctcatatgctcataatgactgaattagtaaaacccaataaatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ttaatacaatatctttctcatatgctcataatgactgaattagtaaaacccaataaatca 661
Query: 241 ttttacttcacagctacaaaacaggaggcttgtcgttgtctacacgtgcctattagcatc 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 660 ttttacttcacagctacaaaacaggaggcttgtcgttgtctacacatgcctattagcatc 601
Query: 301 atgaacaacgttacatgatccttccaaaaaccatatccataaaacatcacagactcttcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 atgaacaacgttacatgatccttccaaaaaccatatccataaaacatcacagactcttcc 541
Query: 361 aggaggacgggtctttagacacagggttgagcggcctgtgctatgcacagcaggggttct 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 540 aggaggacgggtctttagacacagggttgaacggcctgtgctatgcacagcaggggttct 481
Query: 421 cacacagacagacagcttggctctgggcaaacatggcaaagtgagcaagagtttgataaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 cacacagacagacagcttggctctgggcaaacatggcaaagtgagcaagagtttgataaa 421
Query: 481 agtcattgtgccaagctccaatccttcctcaagtatgagtgtctaaagaccactcacaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 agtcattgtgccaagctccaatccttcctcaagtatgagtgtctaaagaccactcacaga 361
Query: 541 gctccgcttagtctcaggttggatccatctttt-gtagccttctgaagtattcctcctat 599
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 360 gctccgcttagtctcaggttggatccatcttttcgtagccttctgaagtattcttcctat 301
Query: 600 aatttaagtggtttctgtctctcatggggaacttttcgtttag---gtctcccaggttag 656
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 300 aatttaagtggtttctgtctctcatggggaacttttcatttaggatgtctcccaggttag 241
Query: 657 cagtgactgagtggagccagagtccagcctttcatctcct 696
|||||||||||||||||||||||||||||||| |||||||
Sbjct: 240 cagtgactgagtggagccagagtccagccttttatctcct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1100
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1090
Effective search space: 747740
Effective search space used: 747740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
