BAC Information

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BAC

Clone NameMSMg01-293B11
Chromosome3 (Build37)
Map Location 61,171,311 - 61,171,657
singlet/doubletsinglet
Overlap geneRap2b
Upstream geneLOC100040485, Mbnl1, LOC676933, LOC100040501, EG666853, P2ry1
Downstream geneLOC666891, LOC669910, LOC676965, 4631416L12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293B11.T7 (MSMg01no293_b11.b1)MSMg01-293B11.TJ (MSMg01no293_b11.g1)
ACCAG421630AG421631
length764766
length of high quality
(start - end)
347 (386 - 732)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no293_b11.b1 PHD_FILE: MSMg01no293_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:23 2005CHROMAT_FILE: MSMg01no293_b11.g1 PHD_FILE: MSMg01no293_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGTAAAAACATTATTTTTCAATTTGTATACTTGGAAGCAGAATCA
CATCTGACACTAATGGAGATGTGAGATCCGAGTTGGAGAATAAACAAAGG
CCAGGACAGGCAAAATGTTCTTCCTGCCCACGAAATGATGAGATGCAACT
TGGATGGAGAAAAAAAAAATTAAGGCAATATATATTGTTATAGCTTTAAA
GAAACCTGTGATCTCTTTTGGCTTTGCCAAGGGAGTAAATTCCTTAGTTA
AGACTCTTCAGACATCAGCTTTGCCTCAGGAACCTGTGGTATTATATCTT
ATAGATACTTTGTTATTCTGTAAAGATTATTGCACTGGAGAGCCCAAGCA
AAATACAAATAAAACACCAACACACATTGCCTCCTACTTTTAAAAACTGT
TGTGGGCAAATAGAAGGAGAGCAAGGGAATCCTCTTCGTCTTGTTTACTT
TTTGTTCTCAATCTTTGATTTGGTTCCAAAAAAAAACTTTGGAAGGGTTG
AAATAACGGCTAGAATAATTGTATTCCATCCATACGTTGTAGAGGGCAGG
GTGTGTGAGATCAAAGTTAAGATCACTTCTGACTCGGTGTGGGACATAAA
CAGACAACATCAAACCAAGACAAATAGAAAGTGCCCCTGTTAGTTATTCT
GCCAGGTCCACTTTGCTTTCCCAGGCCTAAGAGGGTGTTACTAGCTGGGG
TTGCGTGGGGGGTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAGCCACTCTGGAA
ATCTGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGTGTTTATATCCCCAACATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTC
CTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATG
CCCCTCCTTAGAAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_b11.b1 MSMg01no293_b11.b1 CHROMAT_FILE:
MSMg01no293_b11.b1 PHD_FILE: MSMg01no293_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:23 2005
         (347 letters)



>mm_chr3_61171111_61171857
          Length = 747

 Score =  663 bits (343), Expect = 0.0
 Identities = 346/347 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggagagcccaagcaaaatacaaataaaacaccaacacacattgcctcctacttttaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tggagagcccaagcaaaatacaaataaaacaccaacacacattgcctcctacttttaaaa 488

                                                                       
Query: 61  actgttgtgggcaaatagaaggagagcaagggaatcctcttcgtcttgtttactttttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 actgttgtgggcaaatagaaggagagcaagggaatcctcttcgtcttgtttactttttgt 428

                                                                       
Query: 121 tctcaatctttgatttggttccaaaaaaaaactttggaagggttgaaataacggctagaa 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 427 tctcaatctttgatttggttccaaataaaaactttggaagggttgaaataacggctagaa 368

                                                                       
Query: 181 taattgtattccatccatacgttgtagagggcagggtgtgtgagatcaaagttaagatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 taattgtattccatccatacgttgtagagggcagggtgtgtgagatcaaagttaagatca 308

                                                                       
Query: 241 cttctgactcggtgtgggacataaacagacaacatcaaaccaagacaaatagaaagtgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cttctgactcggtgtgggacataaacagacaacatcaaaccaagacaaatagaaagtgcc 248

                                                          
Query: 301 cctgttagttattctgccaggtccactttgctttcccaggcctaaga 347
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cctgttagttattctgccaggtccactttgctttcccaggcctaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)