XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAT
GGTAGCGTGGAGTGGGGCCTCCTTATGGATTTTACACCACTTTAAACAAC
CACTTTCTTATCTTTCACAAAACTGCTCCCATGTCTACAGAGGCTGGGCT
TTTGACTGTACTTGACAGTGAAAAGATTTGTGTACACATTTCTGATTTCC
AAATTATAACAGCACGCACTCGAGTTCAAAATGTGTATAGTGTCATTCGT
TTAGTTAACATACAGTCATTTCTGCTTCAAGTTAAGCAAGGTCCACCGGC
CTAAAAGACTGTAGTCTTGATGCAAGCCCCTCCTACCCAGAGGACTGGAG
GCTTATGTTGTTCTTTGCCCTTACACCGGATTGATTGGCTTGTTTCTCTA
TTTCCCCTAACCCGCACAGACAGAAACTGTGATTTTTAGAGGAAACCCTA
GCGAAGCTATCACAATTACCCTTCCACTGTTCAGGTAGGGCAAAATTATA
AGTGTTATTTCCCCAAGATGCAGCCAAACAGTCTACTTATTACGGCTTCC
TCAAGAGTGCGCTCACAGGTGGTTTTGCCGTGAACAATGACTAAGAAGGC
CTGTATGGGCAAGTACAATAATTTGACTTTAGGAAGTCATTATCTGAGCC
AGCCTCCCTCCTGGAAGGGCTCGAGGTTATTATTGACAGAAATGAGCCCA
TGTGTTATGTTTAACACACTCTTAGAACACTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATTTTGCAAATGTCGTTAATGAGTTCGCCCAGT
TCAGTCCCCGCAGCATATGGACGCTGTACAGCGAGTCAGTTTCATTTATG
TGTACAGTGATAGATTCAGGCTGCGAGGAAAACACCCTGCCTATTAAGAG
TGAGCTAACAGATCATCTGACAGGGAACCACAAGCCCATTAAGTCCGTAT
CATGTGGTAATGATTAAATTAATTAAAAAACCTGGATTACTTTCTCTAGG
TAAATGTAGTCCAAGGCCTAAAAGCCACCTCATAGAGACCCTGAAGAGAA
TTCTATTATTTTTTTCGCCCCCTCGCACCTCCAGTGGAGAAACTGCTGAG
CTCTAGAGACCTCCCCGCTAAACTAAAACATGATGTTGATCTTGTAAGCA
CATGCACTGATACTTGGATGATCCACGCCCCAATGTGACCGATAGGACCC
TTTTATCCCCCATCCTTTAAACAGCCCTCATTACCTGATTAAGGCATCGT
TTTTATTGTTCTGTTTACCTTCCCATCTAATGTTAAACTGGTCTTTGTCT
TTCCTTTCTCACGGCCCCCCCGTCCTTGATTTCTCCCCTGTTCTCCTTTT
TCTAACATGAACAGCGCTCTTTTTTAAGTTGTTTCTCCCCGAATGTAATA
TCATTCCCCGCGCCATTTTTCTCACCGCCCCTCTTGTTGCTCATCACCAT
TATTCTTGATTCCCTC

Query= MSMg01no293_k09.b1 MSMg01no293_k09.b1 CHROMAT_FILE:
MSMg01no293_k09.b1 PHD_FILE: MSMg01no293_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:07 2005
         (320 letters)



>mm_chr3_148711540_148712259
          Length = 720

 Score =  588 bits (304), Expect = e-172
 Identities = 313/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatggtagcgtggagtggggcctccttatggattttacaccactttaaacaacc 64
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 520 gaattccatggtagcgtggagtggggcctccttatggattttacaccattttaaacaacc 461

                                                                       
Query: 65  actttcttatctttcacaaaactgctcccatgtctacagaggctgggcttttgactgtac 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 actttcttatctttcagaaaactgctcccatgtctacagaggctgggcttttgactgtac 401

                                                                       
Query: 125 ttgacagtgaaaagatttgtgtacacatttctgatttccaaattataacagcacgcactc 184
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttgacagtgaaaagatttgtgcacacatttctgatttccaaattataacagcacgcactc 341

                                                                       
Query: 185 gagttcaaaatgtgtatagtgtcattcgtttagttaacatacagtcatttctgcttcaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gagttcaaaatgtgtatagtgtcattcgtttagttaacatacagtcatttctgcttcaag 281

                                                                       
Query: 245 ttaagcaaggtccaccggcctaaaagactgtagtcttgatgcaagcccctcctacccaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ttaagcaaggtccaccggcctaaaagactgtagtcttgatgcaagcccctcctacccaga 221

                           
Query: 305 ggactggaggcttatg 320
           ||||||||||||||||
Sbjct: 220 ggactggaggcttatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no293_k09.g1 MSMg01no293_k09.g1 CHROMAT_FILE:
MSMg01no293_k09.g1 PHD_FILE: MSMg01no293_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:07 2005
         (248 letters)



>mm_chr3_148491390_148492037
          Length = 648

 Score =  464 bits (240), Expect = e-135
 Identities = 246/248 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttgcaaatgtcgttaatgagttcgcccagttcagtccccgcagcatatggacgctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttgcaaatgtcgttaatgagttcgcccagttcagtccccgcagcatatggacgctgt 260

                                                                       
Query: 61  acagcgagtcagtttcatttatgtgtacagtgatagattcaggctgcgaggaaaacaccc 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 acagcgagtcagtttcatttatgtgtacagtgatagattcaggctgtgaggaaaacaccc 320

                                                                       
Query: 121 tgcctattaagagtgagctaacagatcatctgacagggaaccacaagcccattaagtccg 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 tgcctattaagagtgagctaacagatcatctgacagggaaccacgagcccattaagtccg 380

                                                                       
Query: 181 tatcatgtggtaatgattaaattaattaaaaaacctggattactttctctaggtaaatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatcatgtggtaatgattaaattaattaaaaaacctggattactttctctaggtaaatgt 440

                   
Query: 241 agtccaag 248
           ||||||||
Sbjct: 441 agtccaag 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)