BAC Information

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BAC

Clone NameMSMg01-293K11
Chromosome3 (Build37)
Map Location 109,905,796 - 109,906,101
singlet/doubletsinglet
Overlap geneNtng1
Upstream gene4930443G12Rik, Slc25a24, Vav3
Downstream geneLOC100043181, LOC100043183, Prmt6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293K11.T7 (MSMg01no293_k11.b1)MSMg01-293K11.TJ (MSMg01no293_k11.g1)
ACCAG422046AG422047
length732853
length of high quality
(start - end)
307 (426 - 732)90 (68 - 157)
definitionCHROMAT_FILE: MSMg01no293_k11.b1 PHD_FILE: MSMg01no293_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:08 2005CHROMAT_FILE: MSMg01no293_k11.g1 PHD_FILE: MSMg01no293_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAA
AATGCCTCTTGTTCTCTGATACTAAATTTGACCATGATACAACATACCAG
GAAGCAAATGTCCTTCACATCCCAGGTAAACATGCAAAGAAATCTCATTT
TGATTGTACTACTGTTAAACATAAGTCTCCCTTGGGAGCATTATAGAAGG
ACCCTGTGTCAAGATCCAGTTGACAAATACAACTTGGTTGTATAAATCAG
AGAGTAAATTAGTATTATAAACATTGTTCAATATTTGGTAAAAATCTGCC
ATTCATACATTCATTGACTACATATTGATCAGATATATAAGAAATATAAT
GCAAAATATGCAATGCAAATAAAGTAAAATGAAATAAATATATGGTAAAT
TGGTATTTTACCCCCTTGGTTGTGAGCCTAGGCTTTAACAGCTAAGTCAT
CTCTCCAGCATCATATAACAACACTTTAAGTCAACGTTAAAATTGTTTTT
AAAATTCATTCATTCATCCACTTACTCACTCATTCATTTATCAACTCAAC
TGACAATTGTTTATTATTAATTACTTGTTATAATTATAGGATATAAAAAT
ATGAATGAATTATCCTTTCAATTCTTGATCTTGAAAACTTTGTAATCACT
TAGGTTTATTACAAAAATTTCATGAGAATTTACCCCTAAAGGTAGGTTCT
AAACATTGACATTTCCTTAAAGCACTCTAGAA
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTAATGTATGCTGCATATACATCCACCTGCCT
GAAAAGGGCATCAGATCCCCTTATAGATGGTTGTGAGTCACCATGTGGTT
GCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGCCAGTGTTCTTAAAC
GCCGAGCCATCTCTCCAGGTCCAGTTCTCTGATATCATTTGCAATGTTTA
ACAAAAAAATGTGCTTGTTGTCTCCTACGAATCATGGGCCTGGCCGTCCC
AGGATGCTGATTCCTATGATAATCAAGAGAGAACTCCCACCTGAATTGAC
ATGTTTTTTTTTTACCCCCGCCCCCCCCCTGATATGATTTTAACTTCAAT
GTCGCTTTTTTGTTTCTTCCTTATTAACATTTTATCCAGATCGATATCTG
TGGTTGCCTCGGATTATCCCCTGTTATAGCATAACTCGAAATTCTTTCTT
GACCACTGTATCTTGGTTTCCTCATTATTTTCGGTGCGATTCTTTTCTTT
ACAATGTCGCCCCTAATTCTTCTTTTTTATAAACGGCTCTTCCTTGTCCA
CTTTATCCTATCACCATAATCCTGTGTTCGCCCTTTATCTCTACCTTCTC
TTCTCTTTTATACAAATCATTTTTCTCTTCCACATTCTTTTCCTTGATTT
TTTTGCCCCGCCCACTCCTTCGCCGCAAGATAACGTTCTTGGTATTTTTC
TCCCTACATATTTTATTTCCCTGAACTTTGTTTCTCTTCACCGACTCCTT
CTTTATTCCCCCCTCCGCTTTTTATTCGTTCCTCTGGACTCCTTTACACC
TCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_k11.b1 MSMg01no293_k11.b1 CHROMAT_FILE:
MSMg01no293_k11.b1 PHD_FILE: MSMg01no293_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:08 2005
         (307 letters)



>mm_chr3_109905595_109906301
          Length = 707

 Score =  545 bits (282), Expect = e-159
 Identities = 300/306 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   cctaggctttaacagctaagtcatctctccagcatcatataacaacactttaagtcaacg 61
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 202 cctaggctttaacagctaagtcatctctccagcatcatataacaacactttaagtcaatg 261

                                                                       
Query: 62  ttaaaattgtttttaaaattcattcattcatccacttactcactcattcatttatcaact 121
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 262 ttaaaattgtttttaaaattcattcattcatccacttactcactcattcatttatcaatt 321

                                                                       
Query: 122 caactgacaattgtttattattaattacttgttataattataggatataaaaatatgaat 181
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 322 caactgacaattgtttattattaattacttgttataattataggatatgaaaatatgaat 381

                                                                       
Query: 182 gaattatcctttcaattcttgatcttgaaaactttgtaatcacttaggtttattacaaaa 241
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 382 gaattatcctttcaattcttgatcttgaaaactttgtaatcacttaggtttaatacaaaa 441

                                                                       
Query: 242 atttcatgagaatttacccctaaaggtaggttctaaacattgacatttccttaaagcact 301
           | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 442 aattcatgagaatttacccctaacggtaggttctaaacattgacatttccttaaagcact 501

                 
Query: 302 ctagaa 307
           ||||||
Sbjct: 502 ctagaa 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space:   208004
Effective search space used:   208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)