BAC Information

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BAC

Clone NameMSMg01-294C19
Chromosome3 (Build37)
Map Location 53,383,631 - 53,542,900
singlet/doubletdoublet
Overlap geneFrem2, Ppia-ps3_416.1, LOC621155
Upstream geneLOC100039762, LOC100039832, Cog6, Lhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3
Downstream geneUfm1, EG666444, LOC100039937, Trpc4, Postn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294C19.T7 (MSMg01no294_c19.b1)MSMg01-294C19.TJ (MSMg01no294_c19.g1)
ACCAG422416AG422417
length742737
length of high quality
(start - end)
361 (382 - 742)252 (447 - 698)
definitionCHROMAT_FILE: MSMg01no294_c19.b1 PHD_FILE: MSMg01no294_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:48 2005CHROMAT_FILE: MSMg01no294_c19.g1 PHD_FILE: MSMg01no294_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,542,540 - 53,542,900)(53,383,631 - 53,383,882)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
TCTGCATTACAAATGGCCACTCTGTCACTCAGTCACTCACCACTGTATTC
CAGTGCCAAGAATCTCCCTCGCCTGGCTTGGACTGAATACTCAATCTTTG
TTTTTTGGCGCGCACACACACACACACCCCTACATACACACATATACACC
CATATATACATACACACATACACAAACACACTCATACATAAACATACATT
TATATACATACACATATATATGCACATATCCACAAACATTCTCACACATA
AATACATACATACACATAAACATATACCCACACGTAACAATAGTTAAAGA
AGAAGCCATATTTTTTAAGACAACAGCGACGGTGCGTGCACATGAGGGTT
TGAAGGGAGCAAAGAGAAGGGGAAAAAGAAGCAATTATACTCTTAAAATA
GTCTCCTGTGTGCCAATAATAGTCACTCTGAAAAATCTAAGTGAACCCAG
ATTGCTCATAAACTAGTAGATATCATACATGATGATACATTTATGAAGAA
ATGTGCAGAATCTAAATAAACTATAGAAAAATCTATTGGCTGCCGCATGC
ACAAATAAGCAGATGAGACAACACAATCCCAATCCAATGTTAAACTAGAA
CACAAAAGCATCCTGTCTTTTCTAATGCCACTTAGTTAGAATAAAACCAC
GGAAAAAGCTTTTTTTTTTTTTAAGTACAAAGAAATGATGCT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACTCCTGTATTTGATCTGACAGAGGGTAAATAGG
CCCATATCAAGTTCAGCCTTTCTGTTGACCTAACTTTTAACAGAAATGTG
TAACCTGCGGGAGAAACTATGAAAGGATATCAGAAAGACAATGAATGATT
TCTACGGTCGCCATCTAGGGTAGCATGGCTTTTCAACTTCGCATTACATA
CACAGTAGAAGTGTATGCGCAGGCTGGCTCAAGCAGTCACAGCTTATTGT
GAGTGAAATGTTTAAGAACACCATTCTTGCTTGCATCAGTTTTGAAATGC
AGCTCGTTAATCCTTGGCCGCCCCCCTATTTGCCAACTGTTATCCTAGAC
ACTCTGCAAGCATTGACTGGCAAAAAAATAGCTTTTAACCTTCTGAGGTT
AGAACGTTTGTGATTGGTATTTTCGGTGTCAGGATATAGCACACACTCAG
AGGTCAAATAACCTGCAGGAGGTCAAGGGGAGGTGCTGACAATAGATTTG
AACTCAGACAAGACATCTCAGAGCCCATGCTCATAACCACCATGGTTGCC
CAGCGCTTTTCCCAAAGGAAGCCATTCGGGGTGAGAAAGACATTGCTAAC
ACCTGAGCAAAAGCCAACCTGATATCAAGAAAAAAGAAATTTACATCACA
GTCGAGTGGAGTAAAGGCAGAGAGAGGGAAAGAAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_c19.b1 MSMg01no294_c19.b1 CHROMAT_FILE:
MSMg01no294_c19.b1 PHD_FILE: MSMg01no294_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:48 2005
         (361 letters)



>mm_chr3_53542340_53543100
          Length = 761

 Score =  659 bits (341), Expect = 0.0
 Identities = 356/361 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgcgtgcacatgagggtttgaagggagcaaagagaaggggaaaaagaagcaattatact 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 gtgcgtgcacatgagggtttgaagggagcaaagagaaggggaaaatgaagcaattatact 502

                                                                       
Query: 61  cttaaaatagtctcctgtgtgccaataatagtcactctgaaaaatctaagtgaacccaga 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 cttaaaatagtctcctgtgtgccaataatactcactctgaaaaatctaagtgaacccaga 442

                                                                       
Query: 121 ttgctcataaactagtagatatcatacatgatgatacatttatgaagaaatgtgcagaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgctcataaactagtagatatcatacatgatgatacatttatgaagaaatgtgcagaat 382

                                                                       
Query: 181 ctaaataaactatagaaaaatctattggctgccgcatgcacaaataagcagatgagacaa 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 ctaaataaactatagaaaaatctattggctgtcgcatgcacaaataagcagatgagacaa 322

                                                                       
Query: 241 cacaatcccaatccaatgttaaactagaacacaaaagcatcctgtcttttctaatgccac 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacaatcccaatccaacgttaaactagaacacaaaagcatcctgtcttttctaatgccac 262

                                                                       
Query: 301 ttagttagaataaaaccacggaaaaagctttttttttttttaagtacaaagaaatgatgc 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagttagaataaaaacacggaaaaagctttttttttttttaagtacaaagaaatgatgc 202

            
Query: 361 t 361
           |
Sbjct: 201 t 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space:   264704
Effective search space used:   264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no294_c19.g1 MSMg01no294_c19.g1 CHROMAT_FILE:
MSMg01no294_c19.g1 PHD_FILE: MSMg01no294_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:48 2005
         (252 letters)



>mm_chr3_53383431_53384082
          Length = 652

 Score =  449 bits (232), Expect = e-131
 Identities = 247/252 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggttagaacgtttgtgattggtattttcggtgtcaggatatagcacacactcagaggtca 60
           |||||||| |||||||||||||||||| |||||||||||||||| ||||||| |||||||
Sbjct: 201 ggttagaatgtttgtgattggtattttaggtgtcaggatatagcgcacactcggaggtca 260

                                                                       
Query: 61  aataacctgcaggaggtcaaggggaggtgctgacaatagatttgaactcagacaagacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataacctgcaggaggtcaaggggaggtgctgacaatagatttgaactcagacaagacat 320

                                                                       
Query: 121 ctcagagcccatgctcataaccaccatggttgcccagcgcttttcccaaaggaagccatt 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcagagcccatgctcataaccaccatggttgcccagcgcttttcccaaaggaagccatt 380

                                                                       
Query: 181 cggggtgagaaagacattgctaacacctgagcaaaagccaacctgatatcaagaaaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cggggtgagaaagacattgctaacacctgagcaaaagccaacctgatatcaagaaaaaag 440

                       
Query: 241 aaatttacatca 252
           ||||||||||||
Sbjct: 441 aaatttacatca 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)