BAC Information

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BAC

Clone NameMSMg01-294J12
Chromosome3 (Build37)
Map Location 66,004,075 - 66,004,380
singlet/doubletsinglet
Overlap geneVeph1
Upstream geneKcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866, Ccnl1, LOC625048, Tpi-rs2
Downstream genePtx3, LOC625115, Shox2, Rsrc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294J12.T7 (MSMg01no294_j12.b1)MSMg01-294J12.TJ (MSMg01no294_j12.g1)
ACCAG422726AG422727
length766744
length of high quality
(start - end)
318 (47 - 364)292 (79 - 370)
definitionCHROMAT_FILE: MSMg01no294_j12.b1 PHD_FILE: MSMg01no294_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:18 2005CHROMAT_FILE: MSMg01no294_j12.g1 PHD_FILE: MSMg01no294_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTGTATGAACATGAGGCCTGTGTGGCATGGTTGATATACCCAG
TATCACTCTTTTGGAGAGAAATGATTTTTCCCTTTCCCAGACGGTATAGT
GACAGTTCAGTTGTTAACATTTAACCCTAGTGGCTAGGTTTTCATTCATT
AGTTAGTTAGTTAATTAATTAAAAATGTAACAAAATCTATCATATCTAAG
TTGAATCAGACAAGCTAACAGAAGGAAATGAGCCCCCAGAGAAGACAAAA
GAATGAGAGAGCCACTTGTTCACACACTCGGGAATCCCATAAAAACACTA
AACTGAAATCTGTGTTATTTTTCACACGCCCACCTGCCGCAGAGCTGTGC
AGGCCTGTGCATGCTTCTTCAGTCTGTGTGAGAAAATATGAACTCTGCTG
AGGGAGACTTACAGGGTCTTGTTTTCCTGGTGTTCTCTGTCTCCTTTTAT
ACTCTTTCCTTGAACTCTGAGGAAGTGATTTGATGGAGACATCTCATTTA
CGGTTAAGTGTTCTTAAACTCTCTCATTCCCTGCAGGTTGTTTGGGTGGG
GTATTTGGTCCCCTTTTGTGGTAGGAGAAATTCTCTCCTGCCGGAAAGGT
GAACCCCTTTTATTGAAGTATAGCACAAATAATTACTAGGGAGTCATTTT
CATTCACCGCGTTTTTTTTAATACGATCCTTCTTTGGATAAAACAAATAT
TAACCTTGGCTTCTTN
CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTGTGAACAAAAGAATGAAT
GAGTACCCAGGAGTACTATTAATTAATGCTCTTGAATGCTGGATTCTTAT
TTGAACTTTTGTTTGAAAACATCATCCTATAATTCACATATGGGATATAG
TTATAACAAGAGAGGAAAATAATCAAATCACATTGTTACATATATATGTG
TGTGTGTGTGTATATATATATATATATATGAGAGAGAGAAAGAGAATCAA
TGAAAAATAAGGTAAGGTCTGCGACTGATAGTACAATGTTATCAGGTAAA
TAGCATTGTCCTAGGTTCTTTCTCTATTATCCACACCACTTCAATAAATG
GAGGAATCATTTAAAAATGGAGGGTGATATGATATTAACATGGAGGATGG
AAAAATTTAGAACTTATACAATTTATCCCTGGTATCTAACAAGTGAAAAG
TGACAAAGTGAGGACACGAACCAATATCCAGAAAGCATGTGTTAAAAACA
TGGCCATCTATGATACCAAAGGACCCTGCCTCCTTGATCAGTAACCTACA
TGAAAGACCATTCTGAATTGGATATGAAAATGAGTGACGAAGAGCCCCAG
ACTGAAAATTCTCAAGAGTATAGCTGCAAGGGATTACTACTTTCATCTCT
GTAAACAGTGTGATGTCCACCAGCAAGGATGTCCCCCAAATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_j12.g1 MSMg01no294_j12.g1 CHROMAT_FILE:
MSMg01no294_j12.g1 PHD_FILE: MSMg01no294_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:18 2005
         (292 letters)



>mm_chr3_66004024_66004714
          Length = 691

 Score =  381 bits (197), Expect = e-110
 Identities = 272/307 (88%), Gaps = 18/307 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttgtgaacaaaagaatgaatgagtacccaggagtactattaattaatgctcttgaatg 60
           |||||||||| |||||||||||||||||||| |||||||||||||||||| | |||||||
Sbjct: 357 acttgtgaactaaagaatgaatgagtacccaagagtactattaattaatgat-ttgaatg 299

                                                                       
Query: 61  ctggattcttatttgaacttttgtttgaaaacatcatcctataattcacatatgggatat 120
           |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 298 ctggattcttatttgaacttttgtttgaaaacatcatcctctaattcatatatgggatat 239

                                                                       
Query: 121 agttataacaagagaggaaaataatcaaatcacattgttacatatatatg---------- 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||          
Sbjct: 238 agttataacaagagaggaaaataatcaaatcacattgttacatatatatgtaatatatat 179

                                                                       
Query: 171 -tgtgtgtgtgtgtatatatatatatatatat------gagagagagaaagagaatcaat 223
            | | | | | | |||||||||||||||||||      ||||||||||||||||||||||
Sbjct: 178 atatatatatatatatatatatatatatatatttgagagagagagagaaagagaatcaat 119

                                                                       
Query: 224 gaaaaataaggtaaggtctgcgactgatagtacaatgttatcaggtaaatagcattgtcc 283
           ||||| |||||| ||||||| | || ||||||||||| ||||||||||||||||||||||
Sbjct: 118 gaaaagtaaggtgaggtctggggctaatagtacaatgctatcaggtaaatagcattgtcc 59

                  
Query: 284 taggttc 290
           |||||||
Sbjct: 58  taggttc 52


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 691
Length adjustment: 9
Effective length of query: 283
Effective length of database: 682
Effective search space:   193006
Effective search space used:   193006
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)