Query= MSMg01no294_m03.b1 MSMg01no294_m03.b1 CHROMAT_FILE:
MSMg01no294_m03.b1 PHD_FILE: MSMg01no294_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:30 2005
(684 letters)
>mm_chr3_143920335_143921423
Length = 1089
Score = 1162 bits (601), Expect = 0.0
Identities = 667/699 (95%), Gaps = 19/699 (2%)
Strand = Plus / Plus
Query: 4 ggaattccctccagggcaatgttttccagtcagcctatgaaaagaaaaatggagtaaggg 63
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggaattccctccagggcaatggtttccagtcagcctatgaaaagaaaaatggagtaaggg 251
Query: 64 ctaaaaatcaaaaaacagcgcagcagaagtctgggcagttgtgtgtgtgtgtgtgtgtgt 123
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 252 ctaaaaatcaaaaaacagcgcagcggaagtctgggcagttgtgtgtgtgtgtgtgtgtgt 311
Query: 124 gtgtgtgtgtg------------gcattcaatgtgaatgacatgatgtg-----gggggg 166
||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 312 gtgtgtgtgtgtgtgtgtgtgtggcattcaatgtgaatgacatgatgtgtgtgtgggggg 371
Query: 167 ggtgctcagcaattgttcttgcattcatgttaaaatagaacaaaaagaaattaccaacaa 226
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 372 ggtgctcagcaattgttcttgcattcatgttaaaatagaacaaagagagattaccaacaa 431
Query: 227 agaaagccaggacccagggggaggagactgaatctcaataggcttttaatttcaggaaag 286
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 432 agaaagccaggatccagggggaggggactgaatctcaataggcttttaatttcaggaaag 491
Query: 287 aggatagtgtgttgctgaagagcataagaccctgtatgtacacccgaggagccataccac 346
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 492 aggatagtgtgttgctgaagaacataagaccctgcatgtacacccgaggagccataccac 551
Query: 347 aggggcatgccctgccttagcagtccggttcatgaagtatcc-tcatgctttttcttagt 405
||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||
Sbjct: 552 aggggcatgccctgccttagcagtctggttcatgaagtatccat-atgctttttcttagt 610
Query: 406 tgacttatgctgtccatcttctggaccttgctgacttcatcagcgggccccaaagctaac 465
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 611 tgacttatgctgtccatcttctggaccttgctgactttatcagcgggccccaaagctaac 670
Query: 466 aaatggaaaccaccttagaagtaacacaatccccatatctcagagccaactcccaagtct 525
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 671 aaatggaaaccaccttagaagtaacacaatccccacatctcagagccaactcccaagtct 730
Query: 526 gtgagacagcaggagtcgctatgctttctgagttgcacctctgcaggccagcgcaaggtt 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gtgagacagcaggagtcgctatgctttctgagttgcacctctgcaggccagcgcaaggtt 790
Query: 586 ctgctagggagaacactctacactctcctcccttgatcacatggctattcctcaagcaga 645
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 791 ctgctagggagaacactctatactctcctcccttgatcacatggctattcctcaagcaga 850
Query: 646 ggaaaagggccaatgtctcgctccctctaccccaattag 684
|||||||||||||||||||||| ||||||||||||||||
Sbjct: 851 ggaaaagggccaatgtctcgcttcctctaccccaattag 889
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1089
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1079
Effective search space: 727246
Effective search space used: 727246
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no294_m03.g1 MSMg01no294_m03.g1 CHROMAT_FILE:
MSMg01no294_m03.g1 PHD_FILE: MSMg01no294_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:30 2005
(657 letters)
>mm_chr3_143949861_143950917
Length = 1057
Score = 1145 bits (592), Expect = 0.0
Identities = 601/604 (99%)
Strand = Plus / Minus
Query: 1 ttttccaaatggtttcatgtctaagatttaaattatttatttgagaagttaatcagtttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ttttccaaatggtttcatgtctaagatttaaattatttatttgagaagttaatcagtttg 545
Query: 61 gattttaaaagttacagtaaggcgattttttttcccttttgcctctgatggataatttga 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 544 gattttaaaagttacagtaaggtgattttttttcccttttgcctctgatggataatttga 485
Query: 121 gggaattggctcttagattattaagataaaacatgagtttgcaaagatgctgtctgaact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gggaattggctcttagattattaagataaaacatgagtttgcaaagatgctgtctgaact 425
Query: 181 caatgcctgggggggcccgcctaggaaaaagactctctcatgattattggattcctaggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 caatgcctgggggggcccgcctaggaaaaagactctctcatgattattggattcctaggt 365
Query: 241 gtcagaaacaggagatgcctgcagccagctctctttatcttttatttaatgcaaagtctt 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gtcagagacaggagatgcctgcagccagctctctttatcttttatttaatgcaaagtctt 305
Query: 301 gcgcacctgggtaccacatacttgcctgttaaatgatacatggaagcccgcttgaaacac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gcgcacctgggtaccacatacttgcctgttaaatgatacatggaagcccgcttgaaacac 245
Query: 361 taaagggccttctagagaggtagcctgcttctcggcttctcagctttattttattttgtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 taaagggccttctagagaggtagcctgcttctcggcttctcagctttattttattttgtt 185
Query: 421 aattaatttttttttcttggatggcggtggtacaggtgtgcccgtgggagtcagaggaca 480
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 184 aattaatttttttttcttggatggcggtggtacaggtgtgcccatgggagtcagaggaca 125
Query: 481 gctcacttgggagtcaactctctcctgcctcagaagctcaggattgaactaagagcatca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 gctcacttgggagtcaactctctcctgcctcagaagctcaggattgaactaagagcatca 65
Query: 541 ggcctgaacccaagtgcccccactgactgcattatctcaccagactctttctttgctgtg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 ggcctgaacccaagtgcccccactgactgcattatctcaccagactctttctttgctgtg 5
Query: 601 tttg 604
||||
Sbjct: 4 tttg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|