BAC Information

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BAC

Clone NameMSMg01-294M03
Chromosome3 (Build37)
Map Location 143,920,526 - 143,950,464
singlet/doubletdoublet
Overlap genenone
Upstream gene1700001N15Rik, EG668889, EG621809, LOC100039938, LOC100039952, Lmo4
Downstream geneLOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294M03.T7 (MSMg01no294_m03.b1)MSMg01-294M03.TJ (MSMg01no294_m03.g1)
ACCAG422848AG422849
length732729
length of high quality
(start - end)
684 (44 - 727)657 (73 - 729)
definitionCHROMAT_FILE: MSMg01no294_m03.b1 PHD_FILE: MSMg01no294_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:30 2005CHROMAT_FILE: MSMg01no294_m03.g1 PHD_FILE: MSMg01no294_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,920,526 - 143,921,223)(143,949,861 - 143,950,464)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCCTCCAGGGCAATGTTTTCCAGTCAGCCTATGAAAAGAAAAATGGAG
TAAGGGCTAAAAATCAAAAAACAGCGCAGCAGAAGTCTGGGCAGTTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGGCATTCAATGTGAATGACATGAT
GTGGGGGGGGGTGCTCAGCAATTGTTCTTGCATTCATGTTAAAATAGAAC
AAAAAGAAATTACCAACAAAGAAAGCCAGGACCCAGGGGGAGGAGACTGA
ATCTCAATAGGCTTTTAATTTCAGGAAAGAGGATAGTGTGTTGCTGAAGA
GCATAAGACCCTGTATGTACACCCGAGGAGCCATACCACAGGGGCATGCC
CTGCCTTAGCAGTCCGGTTCATGAAGTATCCTCATGCTTTTTCTTAGTTG
ACTTATGCTGTCCATCTTCTGGACCTTGCTGACTTCATCAGCGGGCCCCA
AAGCTAACAAATGGAAACCACCTTAGAAGTAACACAATCCCCATATCTCA
GAGCCAACTCCCAAGTCTGTGAGACAGCAGGAGTCGCTATGCTTTCTGAG
TTGCACCTCTGCAGGCCAGCGCAAGGTTCTGCTAGGGAGAACACTCTACA
CTCTCCTCCCTTGATCACATGGCTATTCCTCAAGCAGAGGAAAAGGGCCA
ATGTCTCGCTCCCTCTACCCCAATTAGGTAGN
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTTCCAAATGGTTTCATGTCTAAGATT
TAAATTATTTATTTGAGAAGTTAATCAGTTTGGATTTTAAAAGTTACAGT
AAGGCGATTTTTTTTCCCTTTTGCCTCTGATGGATAATTTGAGGGAATTG
GCTCTTAGATTATTAAGATAAAACATGAGTTTGCAAAGATGCTGTCTGAA
CTCAATGCCTGGGGGGGCCCGCCTAGGAAAAAGACTCTCTCATGATTATT
GGATTCCTAGGTGTCAGAAACAGGAGATGCCTGCAGCCAGCTCTCTTTAT
CTTTTATTTAATGCAAAGTCTTGCGCACCTGGGTACCACATACTTGCCTG
TTAAATGATACATGGAAGCCCGCTTGAAACACTAAAGGGCCTTCTAGAGA
GGTAGCCTGCTTCTCGGCTTCTCAGCTTTATTTTATTTTGTTAATTAATT
TTTTTTTCTTGGATGGCGGTGGTACAGGTGTGCCCGTGGGAGTCAGAGGA
CAGCTCACTTGGGAGTCAACTCTCTCCTGCCTCAGAAGCTCAGGATTGAA
CTAAGAGCATCAGGCCTGAACCCAAGTGCCCCCACTGACTGCATTATCTC
ACCAGACTCTTTCTTTGCTGTGTTTGTATCTGTGGCTGCTCAGTGCCTTT
CCAGAATGCATGGTGGCCCTCTCAGGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_m03.b1 MSMg01no294_m03.b1 CHROMAT_FILE:
MSMg01no294_m03.b1 PHD_FILE: MSMg01no294_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:30 2005
         (684 letters)



>mm_chr3_143920335_143921423
          Length = 1089

 Score = 1162 bits (601), Expect = 0.0
 Identities = 667/699 (95%), Gaps = 19/699 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccctccagggcaatgttttccagtcagcctatgaaaagaaaaatggagtaaggg 63
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggaattccctccagggcaatggtttccagtcagcctatgaaaagaaaaatggagtaaggg 251

                                                                       
Query: 64  ctaaaaatcaaaaaacagcgcagcagaagtctgggcagttgtgtgtgtgtgtgtgtgtgt 123
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 252 ctaaaaatcaaaaaacagcgcagcggaagtctgggcagttgtgtgtgtgtgtgtgtgtgt 311

                                                                       
Query: 124 gtgtgtgtgtg------------gcattcaatgtgaatgacatgatgtg-----gggggg 166
           |||||||||||            ||||||||||||||||||||||||||     ||||||
Sbjct: 312 gtgtgtgtgtgtgtgtgtgtgtggcattcaatgtgaatgacatgatgtgtgtgtgggggg 371

                                                                       
Query: 167 ggtgctcagcaattgttcttgcattcatgttaaaatagaacaaaaagaaattaccaacaa 226
           |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 372 ggtgctcagcaattgttcttgcattcatgttaaaatagaacaaagagagattaccaacaa 431

                                                                       
Query: 227 agaaagccaggacccagggggaggagactgaatctcaataggcttttaatttcaggaaag 286
           |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 432 agaaagccaggatccagggggaggggactgaatctcaataggcttttaatttcaggaaag 491

                                                                       
Query: 287 aggatagtgtgttgctgaagagcataagaccctgtatgtacacccgaggagccataccac 346
           ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 492 aggatagtgtgttgctgaagaacataagaccctgcatgtacacccgaggagccataccac 551

                                                                       
Query: 347 aggggcatgccctgccttagcagtccggttcatgaagtatcc-tcatgctttttcttagt 405
           ||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||
Sbjct: 552 aggggcatgccctgccttagcagtctggttcatgaagtatccat-atgctttttcttagt 610

                                                                       
Query: 406 tgacttatgctgtccatcttctggaccttgctgacttcatcagcgggccccaaagctaac 465
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 611 tgacttatgctgtccatcttctggaccttgctgactttatcagcgggccccaaagctaac 670

                                                                       
Query: 466 aaatggaaaccaccttagaagtaacacaatccccatatctcagagccaactcccaagtct 525
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 671 aaatggaaaccaccttagaagtaacacaatccccacatctcagagccaactcccaagtct 730

                                                                       
Query: 526 gtgagacagcaggagtcgctatgctttctgagttgcacctctgcaggccagcgcaaggtt 585
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gtgagacagcaggagtcgctatgctttctgagttgcacctctgcaggccagcgcaaggtt 790

                                                                       
Query: 586 ctgctagggagaacactctacactctcctcccttgatcacatggctattcctcaagcaga 645
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 791 ctgctagggagaacactctatactctcctcccttgatcacatggctattcctcaagcaga 850

                                                  
Query: 646 ggaaaagggccaatgtctcgctccctctaccccaattag 684
           |||||||||||||||||||||| ||||||||||||||||
Sbjct: 851 ggaaaagggccaatgtctcgcttcctctaccccaattag 889


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1089
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1079
Effective search space:   727246
Effective search space used:   727246
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no294_m03.g1 MSMg01no294_m03.g1 CHROMAT_FILE:
MSMg01no294_m03.g1 PHD_FILE: MSMg01no294_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:30 2005
         (657 letters)



>mm_chr3_143949861_143950917
          Length = 1057

 Score = 1145 bits (592), Expect = 0.0
 Identities = 601/604 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttccaaatggtttcatgtctaagatttaaattatttatttgagaagttaatcagtttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ttttccaaatggtttcatgtctaagatttaaattatttatttgagaagttaatcagtttg 545

                                                                       
Query: 61  gattttaaaagttacagtaaggcgattttttttcccttttgcctctgatggataatttga 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 544 gattttaaaagttacagtaaggtgattttttttcccttttgcctctgatggataatttga 485

                                                                       
Query: 121 gggaattggctcttagattattaagataaaacatgagtttgcaaagatgctgtctgaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gggaattggctcttagattattaagataaaacatgagtttgcaaagatgctgtctgaact 425

                                                                       
Query: 181 caatgcctgggggggcccgcctaggaaaaagactctctcatgattattggattcctaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 caatgcctgggggggcccgcctaggaaaaagactctctcatgattattggattcctaggt 365

                                                                       
Query: 241 gtcagaaacaggagatgcctgcagccagctctctttatcttttatttaatgcaaagtctt 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gtcagagacaggagatgcctgcagccagctctctttatcttttatttaatgcaaagtctt 305

                                                                       
Query: 301 gcgcacctgggtaccacatacttgcctgttaaatgatacatggaagcccgcttgaaacac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gcgcacctgggtaccacatacttgcctgttaaatgatacatggaagcccgcttgaaacac 245

                                                                       
Query: 361 taaagggccttctagagaggtagcctgcttctcggcttctcagctttattttattttgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 taaagggccttctagagaggtagcctgcttctcggcttctcagctttattttattttgtt 185

                                                                       
Query: 421 aattaatttttttttcttggatggcggtggtacaggtgtgcccgtgggagtcagaggaca 480
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 184 aattaatttttttttcttggatggcggtggtacaggtgtgcccatgggagtcagaggaca 125

                                                                       
Query: 481 gctcacttgggagtcaactctctcctgcctcagaagctcaggattgaactaagagcatca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 gctcacttgggagtcaactctctcctgcctcagaagctcaggattgaactaagagcatca 65

                                                                       
Query: 541 ggcctgaacccaagtgcccccactgactgcattatctcaccagactctttctttgctgtg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  ggcctgaacccaagtgcccccactgactgcattatctcaccagactctttctttgctgtg 5

               
Query: 601 tttg 604
           ||||
Sbjct: 4   tttg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)