BAC Information

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BAC

Clone NameMSMg01-294M04
Chromosome3 (Build37)
Map Location 19,679,873 - 19,680,167
singlet/doubletsinglet
Overlap genenone
Upstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290, Trim55, Crh, LOC665002
Downstream geneLOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg, Cpa3, EG664965, LOC100040283, Cpb1, Agtr1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294M04.T7 (MSMg01no294_m04.b1)MSMg01-294M04.TJ (MSMg01no294_m04.g1)
ACCAG422850AG422851
length728728
length of high quality
(start - end)
315 (41 - 355)292 (72 - 363)
definitionCHROMAT_FILE: MSMg01no294_m04.b1 PHD_FILE: MSMg01no294_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:30 2005CHROMAT_FILE: MSMg01no294_m04.g1 PHD_FILE: MSMg01no294_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACCAACTTGCTTCTAATATGCAATGTAGCCTGTACTGAAGATTTCTATCT
CAGTGGGATTCCCTGGCTCTTTCATGGTAAACAACTCTGCAGATCATCTC
TGAGCTATTGACTATGTCTTTTGTAATGCTCAATTAGTTACTGAATAGGT
AACTTCCTTACTGCATTTCTACCGGATTCTAAGCTCATCAGCTTCTGGAA
CCTTGGAACACTGGTGGGGCCTTACGCATGTCAGAATTCAATCTTAAAAT
ACACTATTAATAAAATAATACTAAAAGAGAGCACGTGGATCCATACACCA
GGCTATTTTGTTTTATACCGCCCCCACCATATGGGTTAATGAGAACGCCA
AAGCTCGAGGAGGCGAGTTTCCAAGAAAATCTTTTTCTCCTGAGTGCTTC
CAGGCTTTTCAGCCTGACAAGCAGACTTGACTGGAGTGCGTGGCAAATAA
GTACAGGGACAAGGTGTCCCTGAAGCAAGATTCCTGCATCTCCACCCCCA
GACAGACTGAGGAAGATGCAGAGGGAAGGAAACAAAGACAAGATCCTCAC
CGGGGGCTCTGTGGTGCCCTGCCAACTGGACAGGGTTGGTCAGTCTAGCC
ATCTGCCTGTAGCATGAAGGACTCCAGCTAAACTTCTTGAAGGGTGTGCA
ACCCTGTGAGTTGTCCTTGCGGTCTTTG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTATGGGGATAAGCAAATCCATCATATAG
ATGAGACATGCCAAGAAGTTTCCATATATCCAAAGGGCAGCAAACTGAGA
GTTGACTCCAGATGTCATGTTGTTTCAGGCCACAGCCATTTCATTGTTCA
CTCAAGACAATATGAGAGAGAATTAGAGGTAGGGCCATCCTAACCTTTGT
CTTTTATGAAGAAAAACTGCCTTAGACATCTCCAGAAGACACCTACTTAT
TTCTCACCAGAAATATGCTGTGTTGTGGACGACTTTCACGACTCCCTTAT
ATATGCCTTCTATTCTTCCACCCGCGCCTTCCATGCTGGTTTCTGGGGCT
GCAACAGGCTGAGGAAATCATCACAAAAATATAAGCCAGGGAACGCAAAC
TCAGGGTTAACATCTGCTCAGTACCTTCCAGCTGTGTCATAACACAGCAA
CAGATATACTGGGAGGACAAAGGCATTGAAGGAAGAACAAAGGCATGGAA
AGGAAGCAAGAGAATGGGGCCACCACTTTCCTTAAAAACTAACCTGTTCC
ATTAATCCATTCACAAGGGTGATGGCTCATGACCTAGTCAGTTCCTAAAA
GCCCTCCTCTTAAGAGTTTACAATGAACTTCGGAGGAGACATTCATATTA
TAGCAGCAGAGACAGCGATGCTTGCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_m04.g1 MSMg01no294_m04.g1 CHROMAT_FILE:
MSMg01no294_m04.g1 PHD_FILE: MSMg01no294_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:31 2005
         (292 letters)



>mm_chr3_19679673_19680368
          Length = 696

 Score =  536 bits (277), Expect = e-157
 Identities = 289/295 (97%), Gaps = 4/295 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatggggataagcaaatccatcatatagatgagacatgccaagaagtttccatatatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttatggggataagcaaatccatcatatagatgagacatgccaagaagtttccatatatcc 436

                                                                       
Query: 61  aaagggcagcaaactgagagttgactccagatgtcatgttgtttcaggccacagccattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aaagggcagcaaactgagagttgactccagatgtcatgttgtttcaggccacagccattt 376

                                                                       
Query: 121 cattgttcactcaagacaatatgagagagaattagaggtagggccatcctaacctttgtc 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 375 cattgttcactcaagacaatatgagagggaattagaggtagggccatcctaacctttgtc 316

                                                                       
Query: 181 ttttatg----aagaaaaactgccttagacatctccagaagacacctacttatttctcac 236
           |||||||    |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 315 ttttatgaagaaagaaaaactgccttagacatctcgagaagacacctacttatttctcac 256

                                                                  
Query: 237 cagaaatatgctgtgttgtggacgactttcacgactcccttatatatgccttcta 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 cagaaatatgctgtgttgtggacgactttcacgactcccttatatatgccttcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 696
Length adjustment: 9
Effective length of query: 283
Effective length of database: 687
Effective search space:   194421
Effective search space used:   194421
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)