BAC Information

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BAC

Clone NameMSMg01-295A12
Chromosome3 (Build37)
Map Location 98,457,194 - 98,457,499
singlet/doubletsinglet
Overlap genenone
Upstream genePrkab2, Pde4dip, Sec22b, EG433632, LOC100042975, Notch2, Adam30, LOC622561, Reg4, Hmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5
Downstream geneLOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3, LOC668557, Wars2, Tbx15, M6pr-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295A12.T7 (MSMg01no295_a12.b1)MSMg01-295A12.TJ (MSMg01no295_a12.g1)
ACCAG423042AG423043
length754747
length of high quality
(start - end)
314 (48 - 361)280 (79 - 358)
definitionCHROMAT_FILE: MSMg01no295_a12.b1 PHD_FILE: MSMg01no295_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:50 2005CHROMAT_FILE: MSMg01no295_a12.g1 PHD_FILE: MSMg01no295_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:50 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCACATTAATCTTGCAAACCCCTCAGACAGGGGGTGCTGGGTT
AAAGAGGGTGAACAATGGACTTGAGATTGCCTATTGCCATGAGCAGAGGC
TGACACAAGGTTCCGTCAGTGCCCATCCTACACCAAGAGCCATCAGCACT
GGTTTGTGTGAATTTTGTGGGTATCCCTTAGGATGGAACAATGTGAATCT
GTAGACAAACCCTTCTTTACAGATGCTATTAAAAATACTCTTAAGAACTA
GCAAGATTTTGCTGAAAGGACCCTGATATAGCTGTCTCTTATGAGGCTAT
GCCAGTGTTTGGTAATTTCCCCCCCCCCCCCCACAGTCAGCTATTGGATG
GAGAACAGGACCCCCAACGAAAAATAAAAAAAAAGTACCCGGGGAGGTAA
AGGGGTCTGCAACCCTATAGGTGGAACAACAATATGAACTAACCAGTACC
CCGGTAGCTTGCGTCTCTAGCTGCATATTTAGCACAAGATGGCCTAGTTG
GTCATCATTGGTAAGAGAGACCCCTTGGCTTTGCATACTTTATACTGCCT
CAGTACAGGTGATTGCCAGGGCCCTCACACGCGCACTGTTTGTCCTTGAC
AACCTTTTGCCTTATTTTTTTTTTACCATTTTTTTTTTTACTCCTCTCCC
TCTTCCTATTTATTCTCCCCCCCCTCCCCTCTGTTCTCTTTACTCCGCTT
TTTT
CTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCAGACAAGGTCAGAGAAGGA
GAAACTCTGCTAATGGAGTTAGTCCTCCATTCGTGCTGAGCCCCAGAAGG
CCATCCAGTTAATGGTAGACTTCCACCGTAATTAGCAGTTTTCCCACAGC
AGTGTTCAGGTCAAGTAGGGTTTAGATCTTAACTGTACTTATTAGTGTTT
GTATTCATCATATTTTTTTTCATCACTATGAGAAAGTGTTCCAGAAATGC
AACTTAAAGAAGGGAGGGTTTATTCGTGCTCCCTGTTAAAAGGGAGCCGG
AAGAGTCCTTTANATCGGTTCCNGAGCCAGCCGCATAAGATATCCATAGT
CAGGAAGCAAAATGGTGCCTAAAAAATGCACCCAAATTTTCGTGGGGGGG
GGTTTGCTTGTTCAGTCTGGTTTTATTCTGTTTTTGCTTTGCTTTGCTTT
GCTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCTTT
GCTTTGCTTTGCTTCGCTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCTTT
GCTTTGCTTGAACAGGTTTTTATGCTGTATTTCATGATGTCCTCCATCTC
ACTAAGTAGCTCAGGTTAGCTTTGAACTCTTTGATATTCCGATGTTTTGG
CTATTGGATAGCTCACCATTGTTCCATGACCCCCTATATCACCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_a12.b1 MSMg01no295_a12.b1 CHROMAT_FILE:
MSMg01no295_a12.b1 PHD_FILE: MSMg01no295_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:50 2005
         (314 letters)



>mm_chr3_98456990_98457703
          Length = 714

 Score =  561 bits (290), Expect = e-164
 Identities = 302/306 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcacattaatcttgcaaacccctcagacagggggtgctgggttaaagagggtga 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 205 gaattctcacattaatcttgcaaacccctcagacagggggtgctgggttaaagagggaaa 264

                                                                       
Query: 65  acaatggacttgagattgcctattgccatgagcagaggctgacacaaggttccgtcagtg 124
           |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 265 acaatggacttgagattgcctattgccacgagcagaggctgacacaaggttctgtcagtg 324

                                                                       
Query: 125 cccatcctacaccaagagccatcagcactggtttgtgtgaattttgtgggtatcccttag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cccatcctacaccaagagccatcagcactggtttgtgtgaattttgtgggtatcccttag 384

                                                                       
Query: 185 gatggaacaatgtgaatctgtagacaaacccttctttacagatgctattaaaaatactct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gatggaacaatgtgaatctgtagacaaacccttctttacagatgctattaaaaatactct 444

                                                                       
Query: 245 taagaactagcaagattttgctgaaaggaccctgatatagctgtctcttatgaggctatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taagaactagcaagattttgctgaaaggaccctgatatagctgtctcttatgaggctatg 504

                 
Query: 305 ccagtg 310
           ||||||
Sbjct: 505 ccagtg 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)