Query= MSMg01no296_j12.b1 MSMg01no296_j12.b1 CHROMAT_FILE:
MSMg01no296_j12.b1 PHD_FILE: MSMg01no296_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:49 2005
(425 letters)
>mm_chr3_127123975_127124802
Length = 828
Score = 735 bits (380), Expect = 0.0
Identities = 415/428 (96%), Gaps = 3/428 (0%)
Strand = Plus / Plus
Query: 1 ttggctctgctgttatccacatggaaatatccacctctctttggtctctcgattcacgtg 60
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 201 ttggctctgctgttatccacatggaaatgtccacctctctttggtctctcgattcatgtg 260
Query: 61 gaaggatgtagcatcctgaagcacagcacccttgccttctgaacacacatcccagacact 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 gaaggatgtagcatcctgaagcacagcacccttgccttctgaacacacaccccagacact 320
Query: 121 ggtagcaggtcacagggtggtaccaccacaggtgggcttctgagaagagcactgttttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtagcaggtcacagggtggtaccaccacaggtgggcttctgagaagagcactgttttaa 380
Query: 181 aacaataactgtaggaactacatgatgggcataggagatgagtatatagacactgtc--- 237
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactataactgtaggaactacatgatgggcataggagatgagtatatagacactgtcgtc 440
Query: 238 atctctcaactgctggatacagttgggggtttcaataggctttataatagcccacaaact 297
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 441 atctctcaactgctggatacagttgggggtttcaataggctttataatagtttataaact 500
Query: 298 taccatgagattctgccattctcctaagccaatataacatctaactgtactcttagtatt 357
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 taccatgaggttctgccattctcctaagtcaatataacatctaactgtactcttagtatt 560
Query: 358 tattgaaacttttttaccctgcatcaaagaagattcttcttgtaacagatggagaactgg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tattgaaacttttttaccctgcatcaaagaagattcttcttgtaacagatggagaactgg 620
Query: 418 ttgaaggt 425
||||||||
Sbjct: 621 ttgaaggt 628
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 828
Length adjustment: 9
Effective length of query: 416
Effective length of database: 819
Effective search space: 340704
Effective search space used: 340704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no296_j12.g1 MSMg01no296_j12.g1 CHROMAT_FILE:
MSMg01no296_j12.g1 PHD_FILE: MSMg01no296_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:50 2005
(245 letters)
>mm_chr3_127290386_127291030
Length = 645
Score = 474 bits (245), Expect = e-138
Identities = 245/245 (100%)
Strand = Plus / Minus
Query: 1 aagggttcagtagtaagtgcttgcctactatgcataacttagtgaaaacaatcctatttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagggttcagtagtaagtgcttgcctactatgcataacttagtgaaaacaatcctatttc 386
Query: 61 tatttgtgtaccattttctgcactatccttgcaaagcaatttataaagtctacctgttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatttgtgtaccattttctgcactatccttgcaaagcaatttataaagtctacctgttat 326
Query: 121 taatgtattccaagtaataaactttcttattaatttaagcacgtattaaaattataaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taatgtattccaagtaataaactttcttattaatttaagcacgtattaaaattataaagt 266
Query: 181 attactttcctatttattttttcttcatcaagagtatattattctgagaacaaacttatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attactttcctatttattttttcttcatcaagagtatattattctgagaacaaacttatt 206
Query: 241 caaga 245
|||||
Sbjct: 205 caaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
