Query= MSMg01no297_b15.b1 MSMg01no297_b15.b1 CHROMAT_FILE:
MSMg01no297_b15.b1 PHD_FILE: MSMg01no297_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:28 2005
(683 letters)
>mm_chr3_80136482_80137564
Length = 1083
Score = 1191 bits (616), Expect = 0.0
Identities = 667/685 (97%), Gaps = 2/685 (0%)
Strand = Plus / Plus
Query: 1 ttgactagttacaaaaaaggaaactcgggattactgtcatcatggggcagcacaggggcc 60
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 199 ttgactagttacaaaaaaggaaactcgggcttactgtcatcatggggcagcataggggcc 258
Query: 61 ctaagaagaatcccatctggagacagcttcaaggtgttaccatctctagtgccagtctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ctaagaagaatcccatctggagacagcttcaaggtgttaccatctctagtgccagtctct 318
Query: 121 cctgtactgttgcatgccctgtacttcccagccctgttcactccctactgtgaataaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cctgtactgttgcatgccctgtacttcccagccctgttcactccctactgtgaataaaca 378
Query: 181 gtcccgttgccttacgattgatcagactgtttcagtgaaagaatgttttgcatttcaaaa 240
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtcccgttgacttatgattgatcagactgtttcagtgaaagaatgttttgcatttcaaaa 438
Query: 241 atgattttaattattatatttccttagcaagtttgaatttattatttgacacatggttag 300
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atgattttaagtaaaatatttccttagcaagtttgaatttattatttgacacatggttag 498
Query: 301 ttactcatactaatatatatattatatataatttctatataagtatatacaaataaatat 360
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 499 ttactcagactaatatatatattatatataatttctatataagtatatagaaataaatat 558
Query: 361 atataaagttatataaagtatattatgtatatacatatatatgtgtacatgtgtacaaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 559 atataaagttatataaagtatattatgtatatacatatatatgtgtacatgtgtacatat 618
Query: 421 atatgtatgtgtatatttgtgtgtgtatatatata--tatacatacatatatatatatat 478
|||||||||||||||||||||||||| |||||||| |||| ||||| | | ||||||||
Sbjct: 619 atatgtatgtgtatatttgtgtgtgtgtatatatacatatatatacacacacatatatat 678
Query: 479 ataacatatttaaagagaaagtcttcagccacttctttttaatagaataggttttctgag 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ataacatatttaaagagaaagtcttcagccacttctttttaatagaataggttttctgag 738
Query: 539 atcgtaaattatgagttttctcatttcatcatgacagtatttttaaaaaggcaattgcaa 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 atcgtaaattatgagttttctcatttcatcatgacagtatttttaaaaaggcaattgcaa 798
Query: 599 gagtattttatcatattgcagtaatctcccttagtttttagctaataaccacaccaggac 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gagtattttatcatattgcagtaatctcccttagtttttagctaataaccacaccaggac 858
Query: 659 agganatagtttcatttcttatcag 683
|||| ||||||||||||||||||||
Sbjct: 859 aggaaatagtttcatttcttatcag 883
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space: 722129
Effective search space used: 722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_b15.g1 MSMg01no297_b15.g1 CHROMAT_FILE:
MSMg01no297_b15.g1 PHD_FILE: MSMg01no297_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:28 2005
(251 letters)
>mm_chr3_80312247_80312897
Length = 651
Score = 404 bits (209), Expect = e-117
Identities = 245/269 (91%), Gaps = 19/269 (7%)
Strand = Plus / Minus
Query: 1 attctcctgcctctacctccccagatctgccaatttagaggcatttgacacaatccctgt 60
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 544 attctcctgcttctacctccccagatctgccaatttagagacatttgacacaatgcctgt 485
Query: 61 tttgtttagggtg-------------------gggtgtgtgtgtgtgttttgttttgttt 101
||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 484 tttgtttagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttgttttgttt 425
Query: 102 tatgtgaggaatcaaaattagatcatcatgctcgcatgggaggtatgtaccaattgagtc 161
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 424 tatgtgaggaatcaaaattagatcatcatgctcacatgggaggtatgtaccaattgagtc 365
Query: 162 atttttgctgtcctaacacatagcatttatataaagagtttttaagttacaaaacaagta 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 atttttgctgtcctaacacatagcatttatataaagagtttttaagttacaaaacaagta 305
Query: 222 tatactcagtacatatttggaatatcata 250
|||||||||||||||||||||||||||||
Sbjct: 304 tatactcagtacatatttggaatatcata 276
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space: 155364
Effective search space used: 155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
