TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGCAGAGGCGCGGA
ATTCTTTCTGTCTTACTGATATTTTAAAATTATTTTTATCTCTGTTGATC
ATGCACAGAGCAACTACCAGATTTTTGGCCTTTCTTTTGGGAGACAGCTA
TTGATGGGCTACTGGCACCAAAGCCTATAAGCCACCTTAATAAATATATA
TTAAAAAGGAAATGATTTATGCATATGTATAATATATGTGTGTATATGTA
ACAATTATAATTCAGGAAATAGTAGCTATCAACAGTGGTAGGTCATGGAA
GGGGTTGGCGGTAGTGTATCTAGGAAAGTCTGGTGGGAGGTAAGGGATGG
ACAAAAAGATGGAATTATATTTCAATTACAGATATTTAAAAAAATCAAGA
CAGGCAATAAAATATGTTAAAAAACACCCAGCCTTTTATACTTTTATTGT
TATTCTCTCTCATGTATATGTATATGTATGTGTACGTGTGTATGTGTATG
TATATGCATGCATATATATATATATATATATATATATATATATATATATA
TATATATATATATAATCTACTGAGTCTATTTTGTGACCATTTTACATTAG
ACAATCTATAAGGAGGCTCCTTGCTGGAAGAAATTCTTCTCTCAGCAGAC
ATTAGTTGCCTGAAGTTCTTTACCTAGGGGTGGGACCCTAAGAAGTTTTT
CCCATTTAATATTAAAATGTTGATTTGATTGATATCGCAATTGG

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCATTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAG
TGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCC
TAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACAC

Query= MSMg01no297_b23.b1 MSMg01no297_b23.b1 CHROMAT_FILE:
MSMg01no297_b23.b1 PHD_FILE: MSMg01no297_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:29 2005
         (614 letters)



>mm_chr3_136285918_136286929
          Length = 1012

 Score =  866 bits (448), Expect = 0.0
 Identities = 555/622 (89%), Gaps = 52/622 (8%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaaaattatttttatctctgttg--------atcatgcacagagcaactaccagattt 52
           |||||||||||||||||||||||||        |||||||||||||||||||||||||||
Sbjct: 724 tttaaaattatttttatctctgttgattactgtatcatgcacagagcaactaccagattt 665

                                                                       
Query: 53  ttggcctttcttttgggagacagctattgatgggctactggcaccaaagcctataagcca 112
           ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 664 ttggcctttctcttgggagacagctattgatgggctactggcaccacagcctataagcca 605

                                                                       
Query: 113 ccttaataaatatatattaaaaaggaaatgatttatgcatatgtataatatatgtgtgta 172
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 604 ccttaataaatatatattaaaaaggaaatgatttatgcatatatataatatatgtgtgta 545

                                                                       
Query: 173 tatgtaacaattataattcaggaaatagtagctatcaacagtggtaggtcatggaagggg 232
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tatgtaacaataataattcaggaaatagtagctatcaacagtggtaggtcatggaagggg 485

                                                                       
Query: 233 ttggcggtagtgtatctaggaaagtctggtgggaggtaagggatggacaaaaagatggaa 292
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 484 ttggcagtagtgtatctaggaaagtctggtgggaggtaagggatggacaaaaagatgtaa 425

                                                                       
Query: 293 ttatatttcaattacagatatttaaaaaaatcaagacaggcaataaaatatgttaaaaaa 352
           ||||||||||||||||||||||  |||||||||||||||||| |||| ||||||||||||
Sbjct: 424 ttatatttcaattacagatatt--aaaaaatcaagacaggcagtaaactatgttaaaaaa 367

                                                                       
Query: 353 cacccagccttttatacttttattgttattctctctcatgtatatgtatatgtatgtgta 412
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||
Sbjct: 366 cacccagccttttatacttttattgttattctctctcatgtatatgtatgtgtacatgta 307

                                                                       
Query: 413 cgtgtgtatgtgtatgtatatgcatgcatatatatatatatatatatatatatatatata 472
            ||||||||||||||||||||||||  ||||||| |                        
Sbjct: 306 tgtgtgtatgtgtatgtatatgcat--atatata-a------------------------ 274

                                                                       
Query: 473 tatatatatatatatatataatctactgagtctattttgtgaccattttacattagacaa 532
                          |||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 273 ---------------atataatctactgagtctattttgtgactattttacattaggcaa 229

                                                                       
Query: 533 tctataaggaggctccttgctggaagaaattcttctctcagcagacattagttgcctgaa 592
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 228 tctataaggaggctccttgctggaagaaattcttctctcagcagtcattagttgcctgaa 169

                                 
Query: 593 gttctttacctaggggtgggac 614
           ||||||||||||||||||||||
Sbjct: 168 gttctttacctaggggtgggac 147


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1012
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1002
Effective search space:   605208
Effective search space used:   605208
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)