Query= MSMg01no297_c13.b1 MSMg01no297_c13.b1 CHROMAT_FILE:
MSMg01no297_c13.b1 PHD_FILE: MSMg01no297_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:32 2005
(399 letters)
>mm_chr3_29961066_29961863
Length = 798
Score = 661 bits (342), Expect = 0.0
Identities = 362/372 (97%), Gaps = 7/372 (1%)
Strand = Plus / Minus
Query: 3 gaattcatttacttgtctccca---tcttggttcagtaactgtaacccaggctttaccct 59
|||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 368 gaattcatttacttgt----cacgttcttggttcagtaactgtaacccaggctttaccct 313
Query: 60 cggcattccaagtgatgcaacctatcttcaacatagacaagtgagaggttaatgttttcc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cggcattccaagtgatgcaacctatcttcaacatagacaagtgagaggttaatgttttcc 253
Query: 120 actatgctccattttgtttattgcatgacaaagagatctcccttcctttctgtcttagtt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 actatgctccattttgtttattgcatgacaaagagatctcccttcctttctgtcttagtt 193
Query: 180 tgggtttgtattcctgcacaaaacatcatgaccaagaagcaagtggagaaggaaaggatt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tgggtttgtattcctgcacaaaacatcatgaccaagaagcaagtggagaaggaaaggatt 133
Query: 240 tattcagcttacacttccacattgctgttcatcaccaaatgaagtcaggacaggaactca 299
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 132 tattcagcttacacttccacattgctgttcatcaccaaaggaagtcaggacaggaactca 73
Query: 300 cacagggcaggaacttggaggaaagaactgatgaatagaccatggaggggggctgcttac 359
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 72 cacagggcaggagcttggaggaaagaactgatgaagagaccatggaggggggctgcttac 13
Query: 360 tggattgcttcc 371
||||||||||||
Sbjct: 12 tggattgcttcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 798
Length adjustment: 9
Effective length of query: 390
Effective length of database: 789
Effective search space: 307710
Effective search space used: 307710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_c13.g1 MSMg01no297_c13.g1 CHROMAT_FILE:
MSMg01no297_c13.g1 PHD_FILE: MSMg01no297_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:32 2005
(547 letters)
>mm_chr3_29779854_29780802
Length = 949
Score = 901 bits (466), Expect = 0.0
Identities = 529/550 (96%), Gaps = 4/550 (0%)
Strand = Plus / Plus
Query: 1 cagggcttgggacctagggatgaaggaagagggagaagattcaccatacaagcttggcgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 cagggcttgggacctagggatgaaggaagagggagaagattcaccatacaagcttggtgg 260
Query: 61 gcatggcaggtacctgttattacagctctttggaaagcacaaactaaattcatgagtcaa 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatggcaggtacctgttattacacctctttggaaagcacaaactaaattcatgagtcaa 320
Query: 121 gctagctggttcgcatagctggatccagcaagctccaaatgctgcaagagaccactcatc 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 gctagctggttcgcatagctggatccagcaagctccaagtgctgcaagagaccactcatc 380
Query: 181 catgagtaaaatggaaactgatagcggaaaatcctggccatcaacttccagcttcacatg 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 catgagtaaaatggaaactgatagcggaaaatgctggccatcaacttccagcttcacatg 440
Query: 241 catgat-caaacacatgttcatatccacacatgcacacacatatatgtatgccctcagac 299
|||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 catg-tacaaacacatgttcatgtccacacatgcacacacatatatgtatgccctcagac 499
Query: 300 atgtgaagatgtttaccc-aaaacacatgcacaccacatacacaacgaatgatagttttt 358
||||||||||||| |||| ||||||||| |||||||||||||||| |||| |||| ||||
Sbjct: 500 atgtgaagatgttcaccccaaaacacatacacaccacatacacaaggaataataggtttt 559
Query: 359 tattgctctcagttttaaactaaaacattcaaacattataggcctttccagtacaaatgc 418
|||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||
Sbjct: 560 tattgctctcagttttaaactaaaacattcaagcattagaggccttgccagtacaaatgc 619
Query: 419 tagcataccatgctcatttaatcctaaaaattgtatatgataaacactccattttagaga 478
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 620 tagcatactatgctcatttaatcctaaaaattgtatatgatagacactccattttagaga 679
Query: 479 taaaaaaa-tcaacttaccccaaaatcacctacctagtctcacagaaaataaaaagtaag 537
|||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 680 taaaaaaaatcaacttacccctaaatcacctacttagtctcacagaaaataaaaagtaag 739
Query: 538 caagaatgat 547
||||||||||
Sbjct: 740 caagaatgat 749
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 949
Length adjustment: 10
Effective length of query: 537
Effective length of database: 939
Effective search space: 504243
Effective search space used: 504243
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
