Query= MSMg01no297_j21.b1 MSMg01no297_j21.b1 CHROMAT_FILE:
MSMg01no297_j21.b1 PHD_FILE: MSMg01no297_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:06 2005
(569 letters)
>mm_chr3_51904534_51905501
Length = 968
Score = 1069 bits (553), Expect = 0.0
Identities = 565/569 (99%), Gaps = 1/569 (0%)
Strand = Plus / Minus
Query: 1 aagacagtggttaacttcaaaatgaaaatataatgcttatttgaatagatgaagacaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 aagacagtggttaacttcaaaatgaaaatataatgcttatttgaatagatgaagacaaca 709
Query: 61 gctataaatttctcaatgaattctacttcggcaagttaataacaaacttgaaaaacgatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gctataaatttctcaatgaattctacttcggcaagttaataacaaacttgaaaaacgatt 649
Query: 121 gcctgaaaatcaatttttttctaccagttttcaataatttagcttattgacttatagaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gcctgaaaatcaatttttttctaccagttttcaataatttagcttattgacttatagaaa 589
Query: 181 taccaaacccgtgtgcaaaacagtatattctagcttctgccgaatcacaggcacctcaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 taccaaacccgtgtgcaaaacagtatattctagcttctgccgaatcacaggcacctcaca 529
Query: 241 gatgccagtgtgaataatgtgtgacgcgtgggatgaaaataaaccgtttcaatcctaagc 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gatgccagtgtgaagaatgtgtgacgcgtgggatgaaaataaaccgtttcaatcctaagc 469
Query: 301 aaagacgtgtgtgtagagtctgtgtacagagacagaaattaacatacccatcctttatgg 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 468 aaagacgtgtgtgtagagtctgtgtacagagacagaaattaacatagccatcctttatgg 409
Query: 361 gttacattttcctggaaaataattagtttcagaattcacatccgcctctgagatggaaga 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 408 gttacattttcctggaaaataattagtttcagaattcacatccgcctctgggatggaaga 349
Query: 421 ctactttaagcttatcctatgtatgagatttaaaaaaaaaaaacttcaagatgggttact 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 348 ctactttaagcttatcctatgtatgagatt-aaaaaaaaaaaacttcaagatgggttact 290
Query: 481 aagaaaatgttcctcttcattttcttgaattgactgctggattatagtggtactctgttg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 aagaaaatgttcctcttcattttcttgaattgactgctggattatagtggtactctgttg 230
Query: 541 gggcacaaagcaattaaatttagttctca 569
|||||||||||||||||||||||||||||
Sbjct: 229 gggcacaaagcaattaaatttagttctca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 968
Length adjustment: 10
Effective length of query: 559
Effective length of database: 958
Effective search space: 535522
Effective search space used: 535522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_j21.g1 MSMg01no297_j21.g1 CHROMAT_FILE:
MSMg01no297_j21.g1 PHD_FILE: MSMg01no297_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:06 2005
(564 letters)
>mm_chr3_51741426_51742387
Length = 962
Score = 984 bits (509), Expect = 0.0
Identities = 549/563 (97%), Gaps = 4/563 (0%)
Strand = Plus / Plus
Query: 3 tctgaggacaactttggggttagtcctgacgttctagcttgtcccaggctgcatctctta 62
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 203 tctgaggacaactttggggttagtcctgacgttctagcttgtcccaggctggatctctta 262
Query: 63 ctgtttactgcagcgcacctcaggctagctggtcataactgccatgattctcctgcctct 122
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctgttgactgcagcgcacctcaggctagctggtcataactgccatgattctcctgcctct 322
Query: 123 gctccctctctccttaggaatactgcgatcgcagatgcacgctattacatatacctttct 182
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gctccatctctccttaggaatactgcgatcgcagatgcacgctattacatatacctttct 382
Query: 183 gtggagtctgggtatctaagctcaggctgccctaacaacttcagccactgagccatcttc 242
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 383 gtggagtctgggtatctaagctcaggctgccataacaacttcagccactaagccatcttc 442
Query: 243 cccctgcccttgtaggcatgcattccaggaaataatgggaatagccagatcgactttctt 302
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 443 cccctgcccttggaggcatgcattccaggaaataatgggaatagccagattgactttctt 502
Query: 303 tttaagaagcacacatacgattttttttttcacga-aggcatttttcccaaaggagttct 361
|||||||||||||||||||||||||||| ||| | ||||||||||| ||||||||||||
Sbjct: 503 tttaagaagcacacatacgatttttttt--cac-acaggcatttttctcaaaggagttct 559
Query: 362 gccatcgtgagggctgtaagctctatcaggtgattagacacagaacttctccacagatct 421
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 560 gccatcgtgagggctgtaagctctatcaggtgattagacacagaacatctccacagacct 619
Query: 422 aaagagttcctgaggacctctaacagggaaataggttagcaaaacacagatgcaagccaa 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaagagttcctgaggacctctaacagggaaataggttagcaaaacacagatgcaagccaa 679
Query: 482 ttacgaaatcatgggatcttcagggttgacccctggctggcaccgggttaaagctgattg 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttacgaaatcatgggatcttcagggttgacccctggctggcaccgggttaaagctgattg 739
Query: 542 ttccatccatccgaggcaacagg 564
|||||||||||||||||||||||
Sbjct: 740 ttccatccatccgaggcaacagg 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 962
Length adjustment: 10
Effective length of query: 554
Effective length of database: 952
Effective search space: 527408
Effective search space used: 527408
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
