TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGG
AATTCACCAGTATTCTCGTACACCTGCGCAAGACCTCAAGATGTTTGTGG
CTTATATGAGGAAGTCAGGTGCAAGTCATACGACTTAGCTGCAGTCCCTG
GCGCCTTTGGGACTGCCGCCACACCTGCTCCTCACAAATATTAAAGACAA
ACCCTTGCCAAGAAGTCATTATGACTAGAGTTGGCAATCAGGGAATTTTA
GAATACTTTTATTTATGTTTCTGCGAAGAATGTTGTGGGTATTTTGATTA
GGATTACATTGAACCTGTAAATAGCTTTTGGTAGGATGGTCATTTTCACA
TATTCATTCTACTGATCCTTGAATATTAGCAGTCTTTTTATTTACTAGTG
GCTTCCCCAATTAGTTTTCAGAGATCAGACGTTTTTATCATAAAGGTCTT
TCCCCTCCTTGTTTACATTTATTCCAAGATAGTTTATTGTGCCAATGACT
TCTTTGTCAGTGTTGGTGATATGCAGAAAGGCTTGGGGGAGTTGGTTGGA
TGTGACACTTTGGTGAACTTGTTTGTTTCTAGAAATTTTCAGGTGGAATT
TTAGGGATGTCTTATATGTAGTATCATATCGTCTGCAATTAAGGATAATT
TGGCTTAATTTCCTATTATATTCATTTAATTTTCTTTTTGTGCCACATTA
CTCTTCAAGTATCTTCTGTGAGACTGTCTCTCCTAGACATGACAGGGATA
GCACCCCCACA

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAAGTGACCCCTAGATATAAATCTA
GAATTCTTTACTCAACTAAAGTCTTATTAACAAGAGTTAGAATAAAATAA
AGCCATATGTAGACGGATCTTCCACTTGACCTGATTCTGAGGCTTCTGCC
ATTCTGTCCTATCTTGAATACTCCCATCACTGATATTATATGTTGATGCT
AAAACCTTGCTAAAAGTACAAGAGTACTCTTGACTCTTACGTGTCAGAGG
CTCAAAAAGAAGGCAAAATTTGGGTGTTATTAGGACACCAGGACACACAG
CCATAGACTCCAAAGGATGAAGGTCTGAACTGGGAATCTCACATAAGGAC
AGTTCCTGGAATAGTCAAGATGAGGTATAGGTAGGCATGGTAGCTGAATA
CAGGATTTTATGTAGTAAAGGTTAAGAAACTGGGAAGCTAAAAGCAAAAG
GCAGAGGGAAGGAGAAGTAGTTTAGTTAATAAAGTGTTTGCTTTGTAAGC
ATGAAGACCCAAGTTCTCCAGAACTGAAGTTAAGAGGAAAGAGAGAAAAC
CAAACCTAGGTGAATTAGCATGTGCTTGCACTTCCAGGTCTGTGTTGGTG
GATTCCTGTGGCTTTCTGGCCAGCCAGCCCCCACACCCCCACACACACTC
CTCTACCCACCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGGG
GCATATAAAGTTN

Query= MSMg01no297_n18.g1 MSMg01no297_n18.g1 CHROMAT_FILE:
MSMg01no297_n18.g1 PHD_FILE: MSMg01no297_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:23 2005
         (643 letters)



>mm_chr3_99253333_99254375
          Length = 1043

 Score = 1181 bits (611), Expect = 0.0
 Identities = 639/655 (97%), Gaps = 12/655 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagtgacccctagatataaatctagaattctttactcaactaaagtcttattaacaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 caagtgacccctagatataaatctagaattctttactcaactaaagtcttattaacaaga 252

                                                                       
Query: 61  gttagaataaaataaagccatatgtagacggatcttccacttgacctgattctgaggctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gttagaataaaataaagccatatgtagacggatcttccacttgacctgattctgaggctt 312

                                                                       
Query: 121 ctgccattctgtcctatcttgaatactcccat--------cactgatattatatgttgat 172
           ||||||||||||||||||||||||||||||||        ||||||||||||||||||||
Sbjct: 313 ctgccattctgtcctatcttgaatactcccatactcccatcactgatattatatgttgat 372

                                                                       
Query: 173 gctaaaaccttgctaaaagtacaagagtactcttgactcttacgtgtcagaggctcaaaa 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gctaaaaccttgctaaaagtacaagagtactcttgactcttacgtgtcagaggctcaaaa 432

                                                                       
Query: 233 agaaggcaaaatttgggtgttattaggacaccaggacacacagccatagactccaaagga 292
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agaaggcaaaatttgggtgctattaggacaccaggacacacagccatagactccaaagga 492

                                                                       
Query: 293 tgaaggtctgaactgggaatctcacataaggacagttcctggaatagtcaagatgaggta 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tgaaggtctgaactgggaatctcacataaggacagttcctggaatagtcaagatgaggta 552

                                                                       
Query: 353 taggtaggcatggtagctgaatacaggattttatgtagtaaaggttaagaaactgggaag 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 taggtaggcatggtagctgaatacaggattttatgtagtaaaggttaagaaactgggaag 612

                                                                       
Query: 413 ctaaaagcaaaaggcagagggaaggagaagtagtttagttaataaagtgtttgctttgta 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ctaaaagcaaaaggcagagggaaggagaagtagtttagttaataaagtgtttgctttgta 672

                                                                       
Query: 473 agcatgaagacccaagttctccagaactgaagttaagaggaaagagagaaaaccaaacct 532
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 673 agcatgaagacccaagttctccagaactgaagttaagaggaaagagagaaaaacaaacct 732

                                                                       
Query: 533 aggtgaattagcatgtgcttgcacttccaggtctgtgttggtggattcctgtggctttct 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 aggtgaattagcatgtgcttgcacttccaggtctgtgttggtggattcctgtggctttct 792

                                                                  
Query: 593 ggccagccagcccccacacccccacacacac----tcctctacccacccactccc 643
           ||||||||||||||| | |||||||||||||    ||||||||||||||||||||
Sbjct: 793 ggccagccagcccccccccccccacacacacacactcctctacccacccactccc 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)