BAC Information

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BAC

Clone NameMSMg01-298B01
Chromosome3 (Build37)
Map Location 73,141,937 - 73,142,309
singlet/doubletsinglet
Overlap genenone
Upstream gene2010204N08Rik, Slitrk3
Downstream geneBche, LOC667425, LOC619764, LOC667434
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298B01.T7 (MSMg01no298_b01.b1)MSMg01-298B01.TJ (MSMg01no298_b01.g1)
ACCAG425218AG425219
length743743
length of high quality
(start - end)
597 (45 - 641)377 (75 - 451)
definitionCHROMAT_FILE: MSMg01no298_b01.b1 PHD_FILE: MSMg01no298_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:40 2005CHROMAT_FILE: MSMg01no298_b01.g1 PHD_FILE: MSMg01no298_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATGGAGACACCCCATTTAAGATCGAGTATTCCAAGGCCTGTCTCT
TCACATTATCTGGCTTTGGTCAATCTATTTGTTCCCATCTACTGCAGGAA
GAAATATCCCTGAATATGACTGAACAATGCAGTGATCTATGAGTGCAGCA
AAAGGTTGTAAGCAGTCATTTTATAGCTACTTTCTTTCAACAGAACGTTA
AAATTTAGTTCTTACCTAAGTCACTGGCATCTCTAATCTCTGGTCCTAAG
CTATCTGAACAGTATCTGGGGTCGGTTTTCTCTCATAGAATAGTCCTTAA
ACCCAATCAGATATTGTTTAGTTGCCATGATGCCTATTCTTGGTTGTCAA
CTTGTCTACATCTGGAATTAATAGAAACCCAAAAATTCCCACCTCTGGGG
GATTTTGCTCAATTAAATCATTTGAAGTAGGAAGATACACTTTTTATTAT
TATTATTTTTATTAGGTATTTTCTTCATTTACATTTCCAATGCTATCCCC
AATGTCCCCCATACCCTCGCCACCACTCCCCTGCTCACCCACTCCCACTT
CTTGGNCCTGGCATTCCCCTGTATTGAGGCATATAAAGTTTGCAAGACAA
CAAAAAAAAAAGAAGATACACTTTGAAGTGAGTAGACCTACCTTCAATGC
AGATTCTTTGAATGAAGAAGAACATCTCTAATCTGAAACACAN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTATAGAATAGTATGAGGTTATGGT
GGTGATCTGCACTATGAGAATGGCCATCATAAACGATAGCAGCATTGCAG
AGAATACCAACCAAAGCGTGGGGGACATCCCTGAGAAGCAGGAATCTGCA
TATTATGAAACATGGATATTCAAAACAGAGATTTCTATGGCTTCCAATGG
AAAGGACAATAACCCTGACTATGTAGGATGCTACATGGTTCTGTGTGTCT
TCTGCCTGGTTCTGATTTTCATATTTTTGCTACAGTGATAAAATAATCCT
AAGTATATTTGTGTTTCACTCTATAAATTGTTCAAGTGAATTATTTTTAA
ACTCTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTAAGAGAGAGACAC
AGAGATCGAGACAGAGACAGAGACAGAGACAGAGAGACAGAGAGAAAAAG
AGACGCAGAGAGAGATTCCTAAGGTAGTATATAGATTAGGGTCTCTAAAC
AGAATGAAATGAGTATTGAGTATTCTTTGGAAGCCTGAATCCTTAATTTG
TGCTGCTGCCATAAGTATTGGAGTTGTTAAGAGCACTTATACTCTCTATT
AGAGAGAACATTACTACTAATTATACTGTATAGAATGCTTTTTTGATACT
CCTCTGTTGCGGCAGAAATTTTTAGTCCCTACCTGTGGTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_b01.g1 MSMg01no298_b01.g1 CHROMAT_FILE:
MSMg01no298_b01.g1 PHD_FILE: MSMg01no298_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:40 2005
         (377 letters)



>mm_chr3_73141737_73142513
          Length = 777

 Score =  656 bits (339), Expect = 0.0
 Identities = 366/377 (97%), Gaps = 4/377 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtatagaatagtatgaggttatggtggtgatctgcactatgagaatggccatcataaac 60
           ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| 
Sbjct: 201 tgtatagaatagtatgacgttatggtggtgatctgcactgtgagaatggccatcataaat 260

                                                                       
Query: 61  gatagcagcattgcagagaataccaaccaaagcgtgggggacatccctgagaagcaggaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 gatagcagcattgcagagaataccaaccaaagcgtgggggacatccctgagaagcaagaa 320

                                                                       
Query: 121 tctgcatattatgaaacatggatattcaaaacagagatttctatggcttccaatggaaag 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 tctgcatattatgaaacatggatattcaaaacagagattgctatggcttccaatggaaag 380

                                                                       
Query: 181 gacaataaccctgactatgtaggatgctacatggttctgtgtgtcttctgcctggttctg 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacaataaccctgattatgtaggatgctacatggttctgtgtgtcttctgcctggttctg 440

                                                                       
Query: 241 attttcatatttttgctacagtgataaaataatcctaagtatatttgtgtttcactctat 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actttcatatttttgctacagtgataaaataatcctaagtatatttgtgtttcactctat 500

                                                                       
Query: 301 aaattgttcaagtgaattatttttaaactctgtgtgtgtgtgtgtgtgtgtatgtgtgtg 360
           |||||||||||||||||||||||||||||    |||||||||||||||||||||||||||
Sbjct: 501 aaattgttcaagtgaattatttttaaact----gtgtgtgtgtgtgtgtgtatgtgtgtg 556

                            
Query: 361 tgtaagagagagacaca 377
           |||||||||||||||||
Sbjct: 557 tgtaagagagagacaca 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)