BAC Information

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BAC

Clone NameMSMg01-298G05
Chromosome3 (Build37)
Map Location 8,420,964 - 8,421,531
singlet/doubletsinglet
Overlap genenone
Upstream genePkia, LOC667807, 3110050N22Rik, Il7, LOC620822, LOC633072, LOC545500
Downstream geneLOC620966, Stmn2, Hey1, LOC100039504, Mrps28, Tpd52, LOC100041389, LOC667886, Zbtb10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298G05.T7 (MSMg01no298_g05.b1)MSMg01-298G05.TJ (MSMg01no298_g05.g1)
ACCAG425452AG425453
length722737
length of high quality
(start - end)
568 (61 - 628)613 (75 - 687)
definitionCHROMAT_FILE: MSMg01no298_g05.b1 PHD_FILE: MSMg01no298_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:04 2005CHROMAT_FILE: MSMg01no298_g05.g1 PHD_FILE: MSMg01no298_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGAGCCGCGGAATTCCAGGC
ATTTCGGGAGAGGGTCTTAAGCCCACACCCACAGTGACACACCTATTACA
ATCAGGTCACATCTATTTCAACAAGGCCACACCTCCAAATGGTGCCATTT
CCTGGTCCAAGACTATACAAACCATCACAAGCATCATCAAGGTTCATTGA
GAAAGGAAAGCTGCAAGTCTACTTCGTGTAACATTATATGCATTTCAATA
AAACTATAAAGAAACAACACAAAGCAGAGATGAGTAGTGTGTGGTCCCTG
ATCTCCATTGTCTGACCCATAGCTTTCCCTGCCACTGTTAGAAGGCATGC
AGACCCCAGCAGCGTCCTGTTTCCCTCAGGAGGCCTGCAGGTGATCCAGG
AACATACATACTCAACCCCTCCCACAGAAATCCACCACCACTCAGGTCCT
CCTTGGGTACAACCAGCAGAGTTGAGTTTTGAGTGGTCCTCGGACTTTAA
TCTTCTGGCCCATGCCTCACCATGCCATCCCAAGGAGCCTCTTGGGGTCC
TAGGTGCATCCAGGTAGTCAGTATAGGTGCATAGTATTCTGTGTCCTGAG
ATCTATTGTCAGGCTCTGCCTGCCTTGCCAAGGAGTCCTACTAGCCTCAG
GACTACCCGATGACTCAAGGATAGTACAAGAATATAATCAACAAGATCCA
GTGCTATATGGCACCATCATAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGACCAGGGGGTGA
CACTATAGAAGTTTCAAAAAAATTCTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCCGTCTGGCGGTTCCTCATATTATTGTACATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCTCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACCCAATCACAAAGGAACTCACACAATATGTACTCACTGATAAG
TGGATATTAGCCCATAACCTAGGATACCCAAGATATAAGATACAATTAGC
TAAACACATGACACTCAAGAAGATTGAACACTGAAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_g05.b1 MSMg01no298_g05.b1 CHROMAT_FILE:
MSMg01no298_g05.b1 PHD_FILE: MSMg01no298_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:04 2005
         (568 letters)



>mm_chr3_8420764_8421731
          Length = 968

 Score = 1029 bits (532), Expect = 0.0
 Identities = 559/568 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggtcttaagcccacacccacagtgacacacctattacaatcaggtcacatctatttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 agggtcttaagcccacacccacagtgacacacctattacaatcaggtcacacctatttca 260

                                                                       
Query: 61  acaaggccacacctccaaatggtgccatttcctggtccaagactatacaaaccatcacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaaggccacacctccaaatggtgccatttcctggtccaagactatacaaaccatcacaa 320

                                                                       
Query: 121 gcatcatcaaggttcattgagaaaggaaagctgcaagtctacttcgtgtaacattatatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatcatcaaggttcattgagaaaggaaagctgcaagtctacttcgtgtaacattatatg 380

                                                                       
Query: 181 catttcaataaaactataaagaaacaacacaaagcagagatgagtagtgtgtggtccctg 240
           || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 cacttcaataaaactataaagaaacaacacaaagcagaggtgagtagtgtgtggtccctg 440

                                                                       
Query: 241 atctccattgtctgacccatagctttccctgccactgttagaaggcatgcagaccccagc 300
           ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 441 atctccattgtctgacccatagctttctctgccactgttagaaggcattcagaccccagc 500

                                                                       
Query: 301 agcgtcctgtttccctcaggaggcctgcaggtgatccaggaacatacatactcaacccct 360
           || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtgtcctgcttccctcaggaggcctgcaggtgatccaggaacatacatactcaacccct 560

                                                                       
Query: 361 cccacagaaatccaccaccactcaggtcctccttgggtacaaccagcagagttgagtttt 420
           ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cccccagaaatccaccacccctcaggtcctccttgggtacaaccagcagagttgagtttt 620

                                                                       
Query: 421 gagtggtcctcggactttaatcttctggcccatgcctcaccatgccatcccaaggagcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagtggtcctcggactttaatcttctggcccatgcctcaccatgccatcccaaggagcct 680

                                                                       
Query: 481 cttggggtcctaggtgcatccaggtagtcagtataggtgcatagtattctgtgtcctgag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttggggtcctaggtgcatccaggtagtcagtataggtgcatagtattctgtgtcctgag 740

                                       
Query: 541 atctattgtcaggctctgcctgccttgc 568
           ||||||||||||||||||||||||||||
Sbjct: 741 atctattgtcaggctctgcctgccttgc 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)