Query= MSMg01no298_l13.b1 MSMg01no298_l13.b1 CHROMAT_FILE:
MSMg01no298_l13.b1 PHD_FILE: MSMg01no298_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:28 2005
(704 letters)
>mm_chr3_34938563_34939665
Length = 1103
Score = 1243 bits (643), Expect = 0.0
Identities = 687/707 (97%), Gaps = 10/707 (1%)
Strand = Plus / Plus
Query: 7 gaattcataaaatcaaagaaagccaagtgcatattttatgtcagcatacagggggagaaa 66
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 207 gaattcataaacgcaaagaaagccaagtgcatattttatgtcagcatacagggg-agaaa 265
Query: 67 ggatttagaaaggtcttacagagaacaaaagccttttgttgctctccagcctaaatatta 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ggatttagaaaggtcttacagagaacaaaagccttttgttgctctccagcctaaatatta 325
Query: 127 gcctaatgccactgaggcctgtggtaaggtagaaagctaagatggggtgagataagataa 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gcctaatgccactgaggcctgtggtaaggtagaaagctaagatggggtgagataagataa 385
Query: 187 ggggaggtggtaacatcaataagtagcagtgctccaggacacaaggtgagccgctgcaaa 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ggggaggtggtaacatcaataagtagcagtgctccaggacacaaggtgagccgctgcaaa 445
Query: 247 gctgtttgattctgaagagaaactgtagatttaaccctgacaaccaatggcccacgctac 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gctgtttgattctgaagagaaactgtagatttaaccctgacaaccaatggcccacgctac 505
Query: 307 tccggtctctgccatggaaattcaataacgccacaatctgtagtcaggcatggtctgcac 366
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 506 tccggtctctgccatggaaattcaataatgccacaatctctagtcaggcatggtctgcac 565
Query: 367 aggctgcctgaggtggcgctgcgggtgctcgtgcagcctgtgtcatgatccgctctcact 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aggctgcctgaggtggcgctgcgggtgctcgtgcagcctgtgtcatgatccgctctcact 625
Query: 427 ggtaagcccagcacaccctcctgttccgagggggaaaaaatcctccagattctatggcca 486
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 626 ggtaagcccagcacaccctcctgttctgaggggggaaaaatcctccagattctatggcca 685
Query: 487 gttgggagctctcttctcttctagcctgaaacttcagtaacgaactcagtcacacttttg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gttgggagctctcttctcttctagcctgaaacttcagtaacgaactcagtcacacttttg 745
Query: 547 atcaagagatgcatgcgcccaagattcagttaatggcttctttcctggagccccatggag 606
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 746 atcaagagatgcatgcgcccaagattctgttaatggcttcttccctggagccccatggag 805
Query: 607 aagtataggatggaacactttccaaaaggacacaaatctttattattattatcatcatca 666
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 806 aagtataggatgaaacactttccaaaaggacacaaatttttattattattatcatcatca 865
Query: 667 tcaccattattactatt---------ttaattggatattttatttac 704
||||||||||||||||| |||||||||||||||||||||
Sbjct: 866 tcaccattattactattattactattttaattggatattttatttac 912
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1103
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1093
Effective search space: 758542
Effective search space used: 758542
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no298_l13.g1 MSMg01no298_l13.g1 CHROMAT_FILE:
MSMg01no298_l13.g1 PHD_FILE: MSMg01no298_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:28 2005
(510 letters)
>mm_chr3_35111373_35112282
Length = 910
Score = 913 bits (472), Expect = 0.0
Identities = 499/510 (97%), Gaps = 4/510 (0%)
Strand = Plus / Minus
Query: 1 tctggaacctctagagaaaagttgcattctcttttaatatatgatgaaaggattaatcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tctggaacctctagagaaaagttgcattctcttttaatatatgatgaaaggattaatcat 479
Query: 61 atccaggattaattaatgtgggacaagatctataattatatctgatatgacagaaagaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 atccaggattaattaatgtgggacaagatctataattatatctgatatgacagaaagaat 419
Query: 121 ttcaatttaaaaaccacactatttttatattcaagatgcatatattaaatacttaacaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttcaatttaaaaaccacactatttttatattcaagatgcatatattaaatacttaacaga 359
Query: 181 gcttttaaacatagtgcacagtgtgttaaccaaataatatggccctgcagatggattaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gcttttaaacatagtgcacagtgtgttaaccaaataatatggccctgcagatggattaca 299
Query: 241 gtccaatggtggagaaattcaccaaaaaggtcaggctgagttctgaggctcatggaagca 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 298 gtccaatggtggagaaattcaccaaaaaggtcaggctgggttctgaggctcatggaagca 239
Query: 301 agctcacttagaaatggatagggtcatgttctatgcctctgtgtgtgtgtgtgtgtgtgt 360
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 238 agctcacttagaaatggatagggtcatgttctatgcc----tgtgtgtgtgtgtgtgtgt 183
Query: 361 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatatacatgtgtgagtctgtgtacactc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 182 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatatacatgtgtgagtctgtgtatactc 123
Query: 421 atgagagcgcacaggtgcagatgcccatgtggaacacagtgtgtgatatctggcatcctc 480
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 122 atgagagtgcacaggtgcagatgcccatgtggaagacagtgtgtgatatctggcatcctc 63
Query: 481 ccttacttatctccatcgtattcgtttcag 510
||||||| ||||||| | ||||||||||||
Sbjct: 62 ccttactgatctccaccatattcgtttcag 33
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
