Query= MSMg01no298_n19.b1 MSMg01no298_n19.b1 CHROMAT_FILE:
MSMg01no298_n19.b1 PHD_FILE: MSMg01no298_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:38 2005
(610 letters)
>mm_chr3_153504682_153505689
Length = 1008
Score = 1052 bits (544), Expect = 0.0
Identities = 590/606 (97%), Gaps = 2/606 (0%)
Strand = Plus / Minus
Query: 5 gaattctttatatgtacttaattaccagaaatattactaggctttcttattaaccatatt 64
||||||||| |||| | ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 808 gaattctttgtatggatttaattaccagaaatcttactaggctttcttattaaccatatt 749
Query: 65 cttttctagtttcttcttttgcatcttccccagaaacagtgtcatctgaaaataaaaata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 cttttctagtttcttcttttgcatcttccccagaaacagtgtcatctgaaaataaaaata 689
Query: 125 attttggcattttgaggtcagggaagatttatatccgcttctggttcctgccttgcttac 184
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 688 attttggcattttgaggtcagggaagatttatatccacttctggttcctgccttgcttac 629
Query: 185 tgggtagaaatttcaaggcagtgttaaacaaccattgctagaacattccttactttgcct 244
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 628 tgggtagaaatttcaaggcagtgttaaacagccattgctagaacattccttactttgcct 569
Query: 245 ttatctttccaaagaaacatcaatggccaaagaagtcctgttcctcctccagggcacatg 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 568 ttatctttccaaagaaacatcaatggccaaagaagtcctgttcctcctccagggcacacg 509
Query: 305 gcgacttgtctcctgctgacttggaggaagctttaggtcctccagttggtgcctcaggta 364
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 508 gcgacttgtctcctgctgacttggaggaagctttaggtcctccacttggtgcctcaggta 449
Query: 365 gccactgcctgtggatggagagtggcgaggacagaaggctctatatgctgacctctgcta 424
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 448 gccactgcctgtggatggagagtggtgaggacggaaggctctatatgctgacctctgcta 389
Query: 425 ctgccctgtttcctttttaagtgtgatcttagccaggcctgcttaatcaagcatgcgtat 484
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 388 ctgcc--gtttcctttttaagtgtgatcttagccaggcctgcttaatcaagcatgcgcat 331
Query: 485 caggcacatgtattaaattcagccaatatctttgtttgtctctattgatttcatcaggtg 544
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 330 caggcacatgtattaaattcagccaatatctttgtttgtctgtattgatttcatcaggtg 271
Query: 545 accttttacccagtggcccactgacaggagatgatgggactgcatgtcttacattcccca 604
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 270 accttttacccagtggcccactgacaggagatgatgggactgcatgtcttaaattcccca 211
Query: 605 ttcttc 610
|||||
Sbjct: 210 ctcttc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1008
Length adjustment: 10
Effective length of query: 600
Effective length of database: 998
Effective search space: 598800
Effective search space used: 598800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no298_n19.g1 MSMg01no298_n19.g1 CHROMAT_FILE:
MSMg01no298_n19.g1 PHD_FILE: MSMg01no298_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:38 2005
(385 letters)
>mm_chr3_153403478_153404262
Length = 785
Score = 683 bits (353), Expect = 0.0
Identities = 377/389 (96%), Gaps = 8/389 (2%)
Strand = Plus / Plus
Query: 1 aggcaggattggccagatagttcttctgctcgtttagagatgtagtcttccataagtaga 60
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 aggcaggattagccagatagttcttctgctcgtttagagatggagtcttccataagtaga 260
Query: 61 gaggtagctttctcatgtgttctcagagttaccagacttcaacgtaatgactggcctcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggtagctttctcatgtgttctcagagttaccagacttcaacgtaatgactggcctcaa 320
Query: 121 agagggggtacagcaggcaggaacagtgaaagttggggaacctcatgaggccaggcatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagggggtacagcaggcaggaacagtgaaagttggggaacctcatgaggccaggcatgg 380
Query: 181 aaggccaccataccacttctgttgcatttcactggttccagacagacctaggcagctcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggccaccataccacttctgttgcatttcactggttccagacagacctaggcagctcca 440
Query: 241 aatggattttgaa----gggcagtagctccacctcttgacggaggagaaacaggtacaac 296
|||||| ||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 aatgga----gaaagaagggcagtagctccacctcttgatggaggagaaacaggtacaac 496
Query: 297 acatcacacaggactctgcaacctgaaattctgtagaggagaatgagacttagaaacaaa 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 acatcacacaggactctgcaacctgaaattctgtagaggagaatgagacttagaaacaaa 556
Query: 357 catgtacaaaacgcataaagagcgaaggc 385
|||||| ||||||||||||||||||||||
Sbjct: 557 catgtagaaaacgcataaagagcgaaggc 585
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space: 291776
Effective search space used: 291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
