CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCTATGAACCTATTTGGTCCTGGATTTTTCGGAGCTGGAACGCTT
TTGTAGTATTTAAATTTCTTCATTTATGATAGGTTTATTTTTAACTTAAA
AAAGGGAATTTATTGGTTCACATGACTGAAAAGTCCAGGTGATATACTAT
TTGCTGCAGGCACAGTTGGATACAGTTGGCATAAATGTGGTCATCAGAAC
TCAAGTCTCTTCTTCTCTTGGCTCCATTTTACACTGTACTGGCTTCATTT
TCTGCCTGGCTCATTCAACATAGTAGGCCCTGTTGGTTTCAGTTTTCTTC
TACAAAGATAAAGTTTCTAAGAGAACTTTTCCACAACCAAGAAAATGCCT
AGGGTTGATTATCATTAGACAAACTTGAATCATGTGTCCATTGCTGAACT
AATCACGAGAGTCAAGATGAACTTTGCTATGTTTGATGAGGTAGCAACAA
AATGTCTAGCACAAAAAGACTGTCTAAATCACAGTACTGAAAATTGGAAG
AGATGGTTCCNAANAAAAAAAAAAAAAAAAAAAAACCAATCAGGAAGTTA
AGAGTGAGATGGATATGGTCACTGGGTAATAAAAAACTAACATCTAGAAT
AAGACTAGATATAGAGAATTTAATCTTTGCCCATAAAGTTGATTTTGCCC
ATAAAGTTGATATTTCTTCCTTGGTAATCAAATTCTAAAAATCAN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTAGGCTTCTTGTATGTTCATGGGCAT
TTCTTTCTTTAGGTTAGGGAAGTTTTCTTCTTCTTCTTTTTTTTTTTTTT
TTTTTTGAAGATATTTCTGGCCTTTTAAGCTGAACGTCTTCATTTTCATC
TATACCTATTATCCTTAAGTTTTGTCTTCTCATTGTTTCTTAGATTTCCT
GGATGTTTTGAGTTAGGACCTTTTTTGCATTTTGCATTTCCTTTGATTGT
TGTGTCCATGTTTTCTATGGAATCTTCTGCACCTGAGATTCTCCCTTCCA
TCTCTTGTATTCTGTTGCTGATGATTCCATCTAAGGTTCCTGATTTTTTT
CCTAGGATTTCTATCTCCAGAGTTGTCTTCCTTTGTGATTTTTTTTTCTA
CTTCCATTTTTAGATCCTGGATGATTTTGTTCAATTCTTTTACCTGTTTG
GTAATTTTTTTTTTCTGTAATTCTTTAAGGTAATTTTGTGTTTCCTCTTT
AAGGGCTTCATGCTATTTACCTTTGTTCTCCTGTATTTCTTTAAAAGAGT
TATTTATTTCCTTCTTAAAGTCCTCCATCATCACCATGATAAGTGACTTT
AGATACATGTCTTGCTTTTCTGGTGTGATGGTGTATCCAGGATTTACTAT
GGTGGGAGAGTTTGTTTCTGATGATGCCAAGTATCCTTGGT

Query= MSMg01no298_o09.b1 MSMg01no298_o09.b1 CHROMAT_FILE:
MSMg01no298_o09.b1 PHD_FILE: MSMg01no298_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:40 2005
         (681 letters)



>mm_chr3_71857351_71858431
          Length = 1081

 Score = 1218 bits (630), Expect = 0.0
 Identities = 662/678 (97%), Gaps = 11/678 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttctatgaacctatttggtcctggatttttcggagctggaacgcttttgtagt 63
           |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 207 ggaattcttctatgaatctatttggtcctggatttttctgagctggaacgcttttgtagt 266

                                                                       
Query: 64  atttaaatttcttcatttatgataggtttatttttaacttaaaaaagggaatttattggt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 atttaaatttcttcatttatgataggtttatttttaacttaaaaaagggaatttattggt 326

                                                                       
Query: 124 tcacatgactgaaaagtccaggtgatatactatttgctgcaggcacagttggatacagtt 183
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 327 tcacatgactgaaaagtccaggtgatatactgtttgctgcaggcacagttggatacagtt 386

                                                                       
Query: 184 ggcataaatgtggtcatcagaactcaagtctcttcttctcttggctccattttacactgt 243
           ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||
Sbjct: 387 ggcataaatgtggtcatcagaactcaagtctcttct---cttggctccattttacactgt 443

                                                                       
Query: 244 actggcttcattttctgcctggctcattcaacatagtaggccctgttggtttcagttttc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 actggcttcattttctgcctggctcattcaacatagtaggccctgttggtttcagttttc 503

                                                                       
Query: 304 ttctacaaagataaagtttctaagagaacttttccacaaccaagaaaatgcctagggttg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttctacaaagataaagtttctaagagaacttttccacaaccaagaaaatgcctagggttg 563

                                                                       
Query: 364 attatcattagacaaacttgaatcatgtgtccattgctgaactaatcacgagagtcaaga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 attatcattagacaaacttgaatcatgtgtccattgctgaactaatcacgagagtcaaga 623

                                                                       
Query: 424 tgaactttgctatgtttgatgaggtagcaacaaaatgtctagcacaaaaagactgtctaa 483
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tggactttgctatgtttgatgaggtagcaacaaaatgtctagcacaaaaagactgtctaa 683

                                                                       
Query: 484 atcacagtactgaaaattggaagagatggttccnaanaaaaaaaaaaaaaaaaaaaaacc 543
           |||||||||||||||||||||||||||||||||       ||||||||||||||||||| 
Sbjct: 684 atcacagtactgaaaattggaagagatggttcc-------aaaaaaaaaaaaaaaaaac- 735

                                                                       
Query: 544 aatcaggaagttaagagtgagatggatatggtcactgggtaataaaaaactaacatctag 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 736 aatcaggaagttaagagtgagatggatatggtcactgggtaataaaaaactaacatccag 795

                                                                       
Query: 604 aataagactagatatagagaatttaatctttgcccataaagttgattttgcccataaagt 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 aataagactagatatagagaatttaatctttgcccataaagttgattttgcccataaagt 855

                             
Query: 664 tgatatttcttccttggt 681
           ||||||||||||||||||
Sbjct: 856 tgatatttcttccttggt 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)