XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTAAG
ACTTGCCTGTCAAAACAAACATTCTTAAAAGAACTCTATGAAATTTCTTT
CAGAATAATTCATTCCAAAAGGCAGATTCTATCACCTAAGAGCCTAAATA
TGACTTCTATTGCCTGTAGCTTTCTCTCTTCCAGCACATTTCTCTTCCTT
GTACACTTTGTGAGAACTGTCTTCTTCTGTGTCCCCTCTGAATCCCCTCT
TGGGCAGCTTTTTATTGCACCCCTTTCTAATCTACTATTTTACCAGTTCC
ATTTCTCCTATGGGAATGTACAGTGTCAGATTTGGGGATATTATTTATCT
CCCCATCTTAGTGTAGAATCACTGAGACAGTGTCCTTTAGCCCAGACTGA
CCTTAGATTTTGTGTGATCAAGATTGACCTCTAAGTTCTGGTACCATTGC
CCCTCCGAATTGTGTCAGATTTGCAGACACCTGCAACTGCTATGCCTAAT
TCATATAGTGCTGAGGATTAAATTTAGGTTTTCCAGCCTGCCAACTTTTG
TATACTTCAAAATTACATATAACTTTCATTTTTATACTTCTTTGATTAGA
AAAGGCTTCTGATTATGTCCATGTAGAGTACCCATGCTTGTTGAGAGAAT
CCCACAAAATTTATTATGAGATTTCACTTAAGTCTTTGATAATTTTTTCA
GTCCAAATTTCAACCAGTTCTACATTCAATTAGTGAGTCATTATTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTCCCGAAATATCTTTGTTTAGCTCTGAGCCCCATTTTTTTAATGGGGT
TATTAGATTTTCTGCAGTCCACCTCCTTGTGTTCTTTATATCTATTGGAT
ATTAGTCCCTTATCTGATTTAGGATAGGCAAAGATTTTTTTTCCCAATCT
GTTGGTGTCCTTTTTGTCTTATTGACAGTGTCTGTTGCCTCACAGAAGCT
TTGCAATTTTATGAAGTCCCATTTGTCAATTCTCGATCTTAGAGCACAAG
CCATTGCTGTTTTATTTTTGAATTTTTTTCCTTGTGCCCATATCTTCCAG
GCTCTCCCCTACTTTCTTCTCTATAAGTTTCAGTGTCTCTGGTTTTATGT
GGAGTTACTTAGTCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAAT
GGATCAATTCGAATTCTTCTACATGATAACCACCAGTTGTACCAGCACCA
TTTGTTGAAGATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGT
CAAAGATCAAGTGACAATAGGTGTGTGGATTCATTTCTGGGTCTTCAATT
CTATTCCATTGGACTACTTTTCTGTTGCTATACCAGTACAATGCAGTTTT
TATCTCTATTGCTCTGTAGTACAGCTTTAGATCAGGCATGTTGATTCCCT
CAGAATTTCCTTTATCCTTGAGAAGACTTTTTGGTATCCTAA

Query= MSMg01no299_d14.b1 MSMg01no299_d14.b1 CHROMAT_FILE:
MSMg01no299_d14.b1 PHD_FILE: MSMg01no299_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:05 2005
         (697 letters)



>mm_chr3_13251220_13252316
          Length = 1097

 Score =  924 bits (478), Expect = 0.0
 Identities = 523/538 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttaagacttgcctgtcaaaacaaacattcttaaaagaactctatgaaatttct 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaattctttaagacttgcttgtcaaaacaaacattcttaaaagaactctatgaaatttct 479

                                                                       
Query: 65  ttcagaataattcattccaaaaggcagattctatcacctaagagcctaaatatgacttct 124
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ttcaaaataattcattccaaaaggcagattctatcacctaagagcctaaatatgacttct 419

                                                                       
Query: 125 attgcctgtagctttctctcttccagcacatttctcttccttgtacactttgtgagaact 184
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 418 attgcctgtagctttctctcttccagcacttttctcttccttgtacactttgtgagaact 359

                                                                       
Query: 185 gtcttcttctgtgtcccctctgaatcccctcttgggcagctttttattgcacccctttct 244
           || ||| || |||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 358 gtgttcctccgtgtaccctctgaatcccctcttgggcagctttttattgcatccctttct 299

                                                                       
Query: 245 aatctactattttaccagttccatttctcctatgggaatgtacagtgtcagatttgggga 304
           |||||||||||||||||||||||||||||||| |||| ||||||||||||||  ||||||
Sbjct: 298 aatctactattttaccagttccatttctcctacgggagtgtacagtgtcagagctgggga 239

                                                                       
Query: 305 tattatttatctccccatcttagtgtagaatcactgagacagtgtcctttagcccagact 364
           |||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tattatttatcttctcgtcttagtgtagaatcactgagacagtgtcctttagcccagact 179

                                                                       
Query: 365 gaccttagattttgtgtgatcaagattgacctctaagttctggtaccattgcccctccga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 gaccttagattttgtgtgatcaagattgacctctaagttctggtaccattgcccctccga 119

                                                                       
Query: 425 attgtgtcagatttgcagacacctgcaactgctatgcctaattcatatagtgctgaggat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 attgtgtcagatttgcagacacctgcaactgctatgcctaattcatatagtgctgaggat 59

                                                                     
Query: 485 taaatttaggttttccagcctgccaacttttgtatacttcaaaattacatataacttt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  taaatttaggttttccagcctgccaacttttgtatacttcaaaattacatataacttt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space:   746769
Effective search space used:   746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)