Query= MSMg01no299_d18.b1 MSMg01no299_d18.b1 CHROMAT_FILE:
MSMg01no299_d18.b1 PHD_FILE: MSMg01no299_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:06 2005
(611 letters)
>mm_chr3_113793687_113794690
Length = 1004
Score = 791 bits (409), Expect = 0.0
Identities = 453/471 (96%), Gaps = 8/471 (1%)
Strand = Plus / Minus
Query: 5 gaattcaatgggatgcacacactacaagctaaagtaatgtcaaaatttgtaattttgaat 64
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gaattcaatgggatacatacactacaagctaaagtaatgtcaaaatttgtaattttgaat 405
Query: 65 tttaaaaaccaacatgaatttgtatcaattataataatggaacagattaaaagtccattt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tttaaaaaccaacatgaatttgtatcaattataataatggaacagattaaaagtccattt 345
Query: 125 attctaagtagtggaaactcaatggtagtgatagtctatttaaaaagaacatatagactt 184
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 344 attctaagtagtggaaactcaatggtagtgatagtctatttaaaaa------atagactt 291
Query: 185 gttttttgaaatggaattttgttctcaaatttcaaaggcatctttacaatttgaaactct 244
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 290 g-tttttgaaatggaattttgttctcaaatttcaaagacatctttacaatttgaaactct 232
Query: 245 tacttttaagaaaataaatatcaaaatatagttttgtcagaaaataacacaccaattgat 304
|| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
Sbjct: 231 tatttttaagaaaataaatagcaaaatatagttttgtcagaaaataacacacctattggt 172
Query: 305 atccattgccaaatgttcagccctgaaaatgtattcatgcaagtaacattataaggagca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 atccattgccaaatgttcagccctgaaaatgtattcatgcaagtaacattataaggagca 112
Query: 365 agcaggttgtatatgtgtatgaaatagagtgaggagcatacacaggaggacttttaagga 424
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 111 agcaggttgtatatgtgtatgaaagagagtgaggagcatacacaggaggacttttaagga 52
Query: 425 gaaaagagaa-gcaagaaatgatgtaattggataatctcaaaaatgcttta 474
|||||||||| ||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 51 gaaaagagaaggcaagaaatgatgtaattgaataatctcaaaaatgtttta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1004
Length adjustment: 10
Effective length of query: 601
Effective length of database: 994
Effective search space: 597394
Effective search space used: 597394
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no299_d18.g1 MSMg01no299_d18.g1 CHROMAT_FILE:
MSMg01no299_d18.g1 PHD_FILE: MSMg01no299_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:06 2005
(668 letters)
>mm_chr3_113622571_113623638
Length = 1068
Score = 1199 bits (620), Expect = 0.0
Identities = 656/668 (98%), Gaps = 1/668 (0%)
Strand = Plus / Plus
Query: 1 cctttctctagtccttttttacttcctcctgggatctggaagtcccattttttccccttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 cctttctctagtccttttttacttcctcctgggatctggaagtcccattttttccccttc 261
Query: 61 accaagcacttggcttcaacccttttttattgacacaatcaagaaccaattagggaaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 accaagcacttggcttcaacccttttttattgacacaatcaagaaccaattagggaaaca 321
Query: 121 cctcccttacatcgttggaagccttaagacaggctgttcaaaagtaagatggtagtgaag 180
| ||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 322 cttcccttacatctttggaagccttaagacaggctgttcaaaagtatgatggcagtgaag 381
Query: 181 tggcaactacccataacaaagatggcagatagtcatgagtactgcccttagctaatatga 240
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 382 tggcaactacccataacaaagatggcagatagtcatgag-attgcccttagctaatatgg 440
Query: 241 cactgaagccatagctccactcgtggggaaagtcacctggttgttatatattagttccat 300
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 cactgaagccatagctccacccgtggggaaagtcacctggttgttatatcttagttccat 500
Query: 301 ggaaaggcagaaatgtgtatcagcgagctggaacaacccagatgttcctcggtgaaagaa 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaaaggcagaaatgtgtatcagtgagctggaacaacccagatgttcctcggtgaaagaa 560
Query: 361 tgaatacagaaagtgtggcacatttacacaacagagtactacttagctattaaaaacaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaatacagaaagtgtggcacatttacacaacagagtactacttagctattaaaaacaaa 620
Query: 421 gattcccatttactttgtgaatagaaacactgctcaacatgtgaagctctgaaacacagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gattcccatttactttgtgaatagaaacactgctcaacatgtgaagctctgaaacacagg 680
Query: 481 cctgcttattaactcatttttctgtagtaaaatttaatttttcacaaattatatttctaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctgcttattaactcatttttctgtagtaaaatttaatttttcacaaattatatttctaa 740
Query: 541 agaaatatagtaaacataggtgtgcaacaattttaaagctccaactttagatgactcaag 600
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 741 agaaatatagtaaacataggtgtgcaacaattttaaagtttcaactttagatgactcaag 800
Query: 601 gaaatgtcaatagttatttgatgccatcaccaaaaatctacatcccttagtgaaacccac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gaaatgtcaatagttatttgatgccatcaccaaaaatctacatcccttagtgaaacccac 860
Query: 661 ctttggtt 668
||||||||
Sbjct: 861 ctttggtt 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
