BAC Information

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BAC

Clone NameMSMg01-299F04
Chromosome3 (Build37)
Map Location 146,795,451 - 146,975,914
singlet/doubletdoublet
Overlap genePpia-ps3_1528.1
Upstream geneMcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299F04.T7 (MSMg01no299_f04.b1)MSMg01-299F04.TJ (MSMg01no299_f04.g1)
ACCAG426129AG426130
length719730
length of high quality
(start - end)		490 (44 - 533)335 (74 - 408)
definitionCHROMAT_FILE: MSMg01no299_f04.b1 PHD_FILE: MSMg01no299_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:13 2005CHROMAT_FILE: MSMg01no299_f04.g1 PHD_FILE: MSMg01no299_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,795,451 - 146,795,936)(146,975,582 - 146,975,914)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGGTCCTTACGTTTGTGTGGCAAGCATTCTACCTCCTGAGCTCTCCC
CTGAGCCTGGAGTCCCAGAGTTGAGTAGGAAGAGGGCTACTTGTTCCCTT
TGATGAAAACCTGATGCCTAATACCTAATGGGAAATACACTTGAAAGATA
GTTTCAGGCTAGATTATAGAAGACCTTACATTTACGCATCCTGTGAGTGT
GCTAGATATTATTCAAGTTTTGAAGTCTGTTTGTTTATGTAGCAGAGAGG
CAATAGGTTTAAAGCCAAGCTTGGAGAAGATCTGTATAACTCTGAAATTA
CCTCTGGATCATTTAGCTAGAGAATAAAACTAGATGAGCAGTTGTTTCTA
AGGTCAAAATTACAGCTTTATCATTTAGAGGCACTGATGTGGAAAACAGA
GGGACGGCACACCCTGATATTGGTGTGTATCCTCCTAAGCCCTTGCATAT
TTATTACCCCTTGGTCGTCACAGCAACCGTGCTAGGTGGCATTGTTATCA
CATTTTACAAATTGAGATGATTTATGCCAAGGGGATTAGTGCAGTCTGGC
CTGCAGAAGATACTCCTGAAATCTCAGCTGAAGTATAACAATCACAAGCA
CCGGCTTATAGAGCCTAAGCCGATCGCCCTAGGTTATGGCGCCGGAAATA
ATCCCCTGAGCCTGGTATG

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCAGAAAACAGTCATGATTTCTCCCAC
CTTAAAGTAGGTCGAGGTAGGAATTTTCTGTGTGTGGGGAGATATTGTGT
AATATTATTTATGTAAGATCACAATCTTCAGTAGCTTTAGGCTATTTTTA
CTAAGTCACTTGACAATACCATATGCATTAACAGTGTATTCTAGTTATTT
CTGCCTCTCCGGACTCCTGCTCACTTCTGTCCACCATCCTCTCACCTGTC
TGTTAGTTCACCATATTCACAAGTTCAGGTTTTGGTCTGTGACCACTTAG
TTTAACCAGGGCTATTGTTGGCACTATGCATTGTAGCCAGATGGCATCCA
CAGTGGCTCCACAACCGCAACCCATGAATCTTCTTCCCCTGGATTGCTCC
ATAGGAAATAGTTCAGCAGGAGGGGGCAAGGTTTGAGGTCAGTGACATTC
CCTAGCCCTGTGATGCACCAAGAGAAAACTTTTCCTTGATCTTCCAATCT
CCCATTCGCTCCAGCTCCATTCCCTCTGTGTTTCTGTGTGTGTCCGTCTG
TCCTCTCCTTTTTCCCTCCCTTTTTCCCTCTCTTCTTCTCTCTCTCGTAT
CCCTGTTTATATATTATCTCTTCCTCCTTTACCCTTTTTTCCCCTCCTTC
GCCCCCCTCTTTTTTTTTCTCCCTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_f04.b1 MSMg01no299_f04.b1 CHROMAT_FILE:
MSMg01no299_f04.b1 PHD_FILE: MSMg01no299_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:13 2005
         (490 letters)



>mm_chr3_146795247_146796136
          Length = 890

 Score =  909 bits (470), Expect = 0.0
 Identities = 482/486 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggtccttacgtttgtgtggcaagcattctacctcctgagctctcccctgagcc 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggtccttatgtttgtgtggcaagcattctacctcctgagctctcccctgagcc 264

                                                                       
Query: 65  tggagtcccagagttgagtaggaagagggctacttgttccctttgatgaaaacctgatgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggagtcccagagttgagtaggaagagggctacttgttccctttgatgaaaacctgatgc 324

                                                                       
Query: 125 ctaatacctaatgggaaatacacttgaaagatagtttcaggctagattatagaagacctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctaatacctaatgggaaatacacttgaaagatagtttcaggctagattatagaagacctt 384

                                                                       
Query: 185 acatttacgcatcctgtgagtgtgctagatattattcaagttttgaagtctgtttgttta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acatttacgcatcctgtgagtgtgctagatattattcaagttttgaagtctgtttgttta 444

                                                                       
Query: 245 tgtagcagagaggcaataggtttaaagccaagcttggagaagatctgtataactctgaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtagcagagaggcaataggtttaaagccaagcttggagaagatctgtataactctgaaa 504

                                                                       
Query: 305 ttacctctggatcatttagctagagaataaaactagatgagcagttgtttctaaggtcaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttacctctggatcatttagctagagaataaaactagatgagcagttgtttctaaggtcaa 564

                                                                       
Query: 365 aattacagctttatcatttagaggcactgatgtggaaaacagagggacggcacaccctga 424
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aattacagttttatcatttagaggcactgatgtggaaaacagagggacggcacaccctga 624

                                                                       
Query: 425 tattggtgtgtatcctcctaagcccttgcatatttattaccccttggtcgtcacagcaac 484
           |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 625 tattggtgcgtatcctcctaagcccttgcatatgtattaccccttggtcgtcacagcaac 684

                 
Query: 485 cgtgct 490
           ||||||
Sbjct: 685 cgtgct 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no299_f04.g1 MSMg01no299_f04.g1 CHROMAT_FILE:
MSMg01no299_f04.g1 PHD_FILE: MSMg01no299_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:13 2005
         (335 letters)



>mm_chr3_146975382_146976116
          Length = 735

 Score =  629 bits (325), Expect = 0.0
 Identities = 331/333 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagaaaacagtcatgatttctcccaccttaaagtaggtcgaggtaggaattttctgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tcagaaaacagtcatgatttctcccaccttaaagtaggtcgaggtaggaattttctgtgt 474

                                                                       
Query: 61  gtggggagatattgtgtaatattatttatgtaagatcacaatcttcagtagctttaggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gtggggagatattgtgtaatattatttatgtaagatcacaatcttcagtagctttaggct 414

                                                                       
Query: 121 atttttactaagtcacttgacaataccatatgcattaacagtgtattctagttatttctg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 413 atttttactaagtcacttgacaataccatatgcattaacagtgtattctagttatttccg 354

                                                                       
Query: 181 cctctccggactcctgctcacttctgtccaccatcctctcacctgtctgttagttcacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cctctccggactcctgctcacttctgtccaccatcctctcacctgtctgttagttcacca 294

                                                                       
Query: 241 tattcacaagttcaggttttggtctgtgaccacttagtttaaccagggctattgttggca 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 293 tattcacaagttcaggttttggtctgtgaccgcttagtttaaccagggctattgttggca 234

                                            
Query: 301 ctatgcattgtagccagatggcatccacagtgg 333
           |||||||||||||||||||||||||||||||||
Sbjct: 233 ctatgcattgtagccagatggcatccacagtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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