Query= MSMg01no299_g17.b1 MSMg01no299_g17.b1 CHROMAT_FILE:
MSMg01no299_g17.b1 PHD_FILE: MSMg01no299_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:20 2005
(659 letters)
>mm_chr3_86166631_86167694
Length = 1064
Score = 1131 bits (585), Expect = 0.0
Identities = 640/661 (96%), Gaps = 7/661 (1%)
Strand = Plus / Plus
Query: 5 gaattcataatgttttgccatgaaaattctgaaacttgactggaatgtattattccctta 64
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 205 gaattcataatgttttgaaatgaaaattctgaaacttgtctggaatgtattattccctta 264
Query: 65 ttgttggctgttattaattaatttttgagaaaatcttcaaactctccaatttaaaaagct 124
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgttggctgttactaattaatttttgagaaaatcttcaaactctccaatttaaaaagct 324
Query: 125 aacaaccaatcaacatgatgttcacttgctgtgagtgtgac-tgtaggaagtacttccta 183
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 325 aacaaccaatcaacatgatgttcacttgctgtgagtgtgacct-taggaagtacttccta 383
Query: 184 gagagtctgtcacaacatagcaaatgctgagtattctaaatgttcactgacgttagtgag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gagagtctgtcacaacatagcaaatgctgagtattctaaatgttcactgacgttagtgag 443
Query: 244 ctcgtaaagaaagtctgtgagtaaactgcactttaatctctgttttcattgacatttaga 303
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctcctaaagaaagtctgtgagtaaactgcactttaatctctgttttcattgacatttaga 503
Query: 304 aaagctggtgtagctggttctctgccttctgcattctttatgacaagaagggaaatgttt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaagctggtgtagctggttctctgccttctgcattctttatgacaagaagggaaatgttt 563
Query: 364 tagttaaaacccacatcattcaaacttcagataattacttgcttcttaaacattaagaga 423
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tagttaaaattgacatcattcaaacttcagataattacttgcttcttaaacattaagaga 623
Query: 424 gattttgagttcattttttaagtagaagcttaaggcttagggtatagctcagtgctcgac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gattttgagttcattttttaagtagaagcttaaggcttagggtatagctcagtgctcgac 683
Query: 484 ctggtgcttagtctgtacaagattgtgggtgggaatcccagcacaagagggaaaacaatg 543
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctggtgcttagtctgtgcaagattgtgggtgggaatcccagcacaagagggaaaacaatg 743
Query: 544 agtccaggaggcaggatttaaaaagtgggctctatgcttttacaccttttttctttttta 603
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agtctgggaggcaggattaaaaaagtgggctctatgcttttacaccttttttctttttta 803
Query: 604 aaaaaggatgcaaaatcttttgttcttac-----taattcccactgaagagtgttcagtt 658
|||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||
Sbjct: 804 aaaaaggatgcaaaatcttttgtttttacctagctaattcccactgaagagtgttaagtt 863
Query: 659 g 659
|
Sbjct: 864 g 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1064
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1054
Effective search space: 684046
Effective search space used: 684046
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no299_g17.g1 MSMg01no299_g17.g1 CHROMAT_FILE:
MSMg01no299_g17.g1 PHD_FILE: MSMg01no299_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:21 2005
(685 letters)
>mm_chr3_86336656_86337740
Length = 1085
Score = 1284 bits (664), Expect = 0.0
Identities = 676/680 (99%), Gaps = 1/680 (0%)
Strand = Plus / Minus
Query: 7 tggtattttctgctaatggaatttctctgggaaactgaataaagaaaaatcagcttccaa 66
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1085 tggtattttctgctaatggaatttctctgggaagctgaataaagaaaaatcagcttccaa 1026
Query: 67 catgcagtttacaaaagaaatcctacccttcctgatgtaaaaggaaacgatatatttttg 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 catgcagtttacaaaagaaatcctacccttcctgatgtaaaaggaaacgatatatttttg 966
Query: 127 ttaacatagacaccagaactcacatctattaaataagagtttagaatg-aaaaaaatgtt 185
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 965 ttaacatagacaccagaactcacatctattaaataagagtttagaatgaaaaaaaatgtt 906
Query: 186 attaaattttaaattttaaacacacctatctgtgtggctgaaaaggataaaatgcaaaca 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 attaaattttaaattttaaacacacctatctgtgtggctgaaaaggataaaatgcaaaca 846
Query: 246 agggtttcttaatgaaaagtattattaaccaaaaacaaacaaacaaaacaccccccaaaa 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 agggtttcttaatgaaaagtattattaaccaaaaacaaacaaacaaaacaccccccaaaa 786
Query: 306 aaacccaaagtttaaaaaaagaggaaatatgtaactatggaacctatgccaccacacaaa 365
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 785 aaacccaaagcttaaaaaaagaggaaatatgtaactatggaatctatgccaccacacaaa 726
Query: 366 agaatataaacctcacagcgaagtagcctaattacttcttcatcatgtccccttcccacc 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 agaatataaacctcacagcgaagtagcctaattacttcttcatcatgtccccttcccacc 666
Query: 426 ccctgtagttgaagacataggccctgagactattactgcttttagatcactttgttattg 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ccctgtagttgaagacataggccctgagactattactgcttttagatcactttgttattg 606
Query: 486 actattctcggtatgatcatttattttaacagactgatgtcacatttggtgttatatctg 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 actattctcggtatgatcatttattttaacagactgatgtcacatttggtgttatatctg 546
Query: 546 atgacatattgtggacattttcttccagaaatggctctttaaggatgagtgcaagaggtt 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 atgacatattgtggacattttcttccagaaatggctctttaaggatgagtgcaagaggtt 486
Query: 606 aaatggcctgactgaggccaaacccaagactacagatttttaatctaaattcttaatatc 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aaatggcctgactgaggccaaacccaagactacagatttttaatctaaattcttaatatc 426
Query: 666 atcacctgcattgaaacatg 685
||||||||||||||||||||
Sbjct: 425 atcacctgcattgaaacatg 406
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space: 725625
Effective search space used: 725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
