Query= MSMg01no299_h20.b1 MSMg01no299_h20.b1 CHROMAT_FILE:
MSMg01no299_h20.b1 PHD_FILE: MSMg01no299_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:26 2005
(538 letters)
>mm_chr3_82712735_82713672
Length = 938
Score = 978 bits (506), Expect = 0.0
Identities = 527/534 (98%), Gaps = 2/534 (0%)
Strand = Plus / Plus
Query: 4 ggaattccacaggagtgctcgcatgtccttttgaatgtgggttagctgtagatattgata 63
||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 204 ggaattccacaggagtgcttgcatgtccttttgaatgtgtgttagctgtagatgttgata 263
Query: 64 tttcctgacatccaagatctgagaaaatatcagtgccttggagtcaccaagacgggattg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttcctgacatccaagatctgagaaaatatcagtgccttggagtcaccaagacgggattg 323
Query: 124 gcactctcagtcagaccccggatgcctctctttaaggtttatacatgtgtccctgagtat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcactctcagtcagaccccggatgcctctctttaaggtttatacatgtgtccctgagtat 383
Query: 184 atgtgtttgtatgtagcatatgtaccatgtgtgtgcaagtgcccacaaaggccagaagag 243
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 384 atgtgtttgtatgtagcatatgttccatgtgtgtgcaagtgcccacaaaggccagaagag 443
Query: 244 gtatcagatcccctggaactgggattacaaaggtcacatttaagagcaacttccaaagat 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atatcagatcccctggaactgggattacaaaggtcacatttaagagcaacttccaaagat 503
Query: 304 gtcattttaataagagattcattttaaataaagaacctaccttttatgttgctatttctt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtcattttaataagagattcattttaaataaagaacctaccttttatgttgctatttctt 563
Query: 364 ttgtaactggtgactagcaatagaaactgactcgtttttttcttttatatatttaatcaa 423
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 564 ttgtaactggtgactagcaatagaaactgactcgtttttt-cttttatatatttaatcaa 622
Query: 424 gtggtgtgtggacttaataagacaactgaatgagtatgggactgagatgaagcagacttt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gtggtgtgtggacttaataagacaactgaatgagtatgggactgagatgaagcagacttt 682
Query: 484 cataatgttggaattaaatttttgacagttttaaactccnttctgtggtgtgtg 537
||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 683 cataatgttggaattaaatttttgacagttttaaactcc-ttctgtggtgtgtg 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no299_h20.g1 MSMg01no299_h20.g1 CHROMAT_FILE:
MSMg01no299_h20.g1 PHD_FILE: MSMg01no299_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:26 2005
(686 letters)
>mm_chr3_82750359_82751444
Length = 1086
Score = 1272 bits (658), Expect = 0.0
Identities = 679/686 (98%)
Strand = Plus / Minus
Query: 1 ttcattgctaaattatttgtttctttactcactactgcttattaagcaggggctctgaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 886 ttcattgctaaattatttgtttctttactcactactgcttattaagcagggactctgaat 827
Query: 61 tttaaatatgttttctgaagagctaagagtggccctataagaaaattaattcctcccatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 tttaaatatgttttctgaagagctaagagtggccctataagaaaattaattcctcccatt 767
Query: 121 atttttgatcatcctggagctttataagaaattaccaatctcataagaaggaagtgattt 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 766 atttttgatcatcctggagctttataagaaatttccaatctcataagaaggaagtgattt 707
Query: 181 tctgtgtttggatttccgtggcagcagttggagggtatccaacggtagttctctcacagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tctgtgtttggatttccgtggcagcagttggagggtatccaacggtagttctctcacagt 647
Query: 241 gaggcttttgtgtactaactcctcccaccccaggtttactgcaggttctagaagcagggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 gaggcttttgtgtactaactcctcccaccccaggtttactgcaggttctagaagcagggg 587
Query: 301 gcaagacaactgtatcgaccagcagtccagcctcctgctctgccttgtccattagctccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gcaagacaactgtatcgaccagcagtccagcctcctgctctgccttgtccattagctccc 527
Query: 361 ctgcaccctagatgtgactttgctgtgtattttaagcagtaactttgaactgaaagctat 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ctgcatcctagatgtgactttgctgtgtattttaagcagtaactttgaactgaaagctat 467
Query: 421 caggggcttatccatggtgaacgaggcaggtgaactgagggtaaagtcccgggagataag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 caggggcttatccatggtgaacgaggcaggtgaactgagggtaaagtcccgggagataag 407
Query: 481 agactttcctagcaagtcccataacagtacttagctaatcaatttctgcagccaccactt 540
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 406 agactttcctagcaagtcccataacagcacttagctaatcaatttctgcagccaccactt 347
Query: 541 ccggacagggagattttgattcattgacatggatacttatttaatggcacataaaattag 600
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ctggacagggagattttgattcattgacatggatacttatttaatggcacataaaattag 287
Query: 601 aggaaacttgtctctcccctgggcatcttccttcatagtacattgccactgggcaattct 660
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 286 aggaaacttgtctctgccctgggcatcttccttcatagtacattgccactgggcaagtct 227
Query: 661 ttctgcacacagagagtgaacaggct 686
||||||||||||||||||||||||||
Sbjct: 226 ttctgcacacagagagtgaacaggct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
