BAC Information

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BAC

Clone NameMSMg01-299I18
Chromosome3 (Build37)
Map Location 14,674,776 - 14,675,066
singlet/doubletsinglet
Overlap genenone
Upstream gene0710005M24Rik, LOC100039882, EG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13
Downstream geneEG545507, Car1, LOC100041785, Car3, Car2, EG634323, LOC100039985, LOC751864, Sirpb1, LOC668101
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299I18.T7 (MSMg01no299_i18.b1)MSMg01-299I18.TJ (MSMg01no299_i18.g1)
ACCAG426290AG426291
length758759
length of high quality
(start - end)
249 (77 - 325)293 (76 - 368)
definitionCHROMAT_FILE: MSMg01no299_i18.b1 PHD_FILE: MSMg01no299_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:30 2005CHROMAT_FILE: MSMg01no299_i18.g1 PHD_FILE: MSMg01no299_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAACACCCGGAA
TTCTCACCTGAGTATCCCCAACGGCAGAGAAGCACCTGAAAAAATGCTCA
ACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAAATTCCA
CCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAT
GCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAT
TGCAGGCTTGTACAACCACTCTGGAGATCAGTCTGGCGGTTCCTCAGAAA
ACTGGATATAGTACTACCGGAGTTACTAGTTATACCTCTCCTGGGCATAT
ATCCAGAAGATGCCCCTTCTGGTAAGAAGGACACATGCTCCACTATGTTC
ATAGCAGCCTTATTTACCCCAGCCAGAAGCTGGAAGGAACCCAGATGCCC
CTCAACAGAGGAATGGATACAGAAGATGTGGTACATCTACCCAATGGAGT
ACTACTCCGCTATTAAAAAGAATGAATTTATGACATTCCTGGCCCAATGG
ATGGACCTGGAGGGCATCCTCCCGAGTGAGGTAACCCATTCACAAAGGAA
CTCCCACAATATGTACTCCCTGATAAGTGGATATTAGCCCCAAACCTAAG
GAACCCATGATATAATATACCTTTTTCCAAACCCCTGAAACTCCACAAAA
ATGAACAACGAAGTGTGAACCCTATGCCCCTCCTATAAGCGGCAACCAAA
ACCCCCTG
CGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACTGACTGTATGTCCAAGAAATT
TTAAGACAACCTTCCGGTTTGTAAGAAGACCGTGGAAGGCTGGTAAATCT
CTTGCTTTGTTCTTTTTTGTAATCGTGAGTTCTATACAGAATGACTTCTT
GGGAGTACTGACAGACACAAGAAGCTCAGAGAAAGTGTGGGATGAGTATA
TAAACTCATCTTTAGTCAATAAAACCAGTTATTGACCTTCCGGAAGAAAA
AGGGAAATCAAAAGAACAGATGCTTCTAATTTTTAATTCATGAAGCTATG
AAGATTTTTGACAAAGAATATTTATTATAGATGGCCTTTGTAAAGTCATG
CTTTGAGGTTGATTTGATTACCGCCGCCATTGCACCTTGTAAGCCAATTT
TGACCTTTCAAAATTACATCTCAATTAATGGCTAGAAAATATAAAAATTG
TAAGACAATTATATTGTCATGGTTCTCTTAAAATGTTTGGTTACAATTGT
GGACAGTGATTTCATTCTTAGCACCGTCTTGGTTATTATGATGCCCCCCA
AATAAATGCCTCAGATATCACTTTGTTCCTAGTAAACAGTTTGTCCTTTT
ACCGTTTGCGACTTCTGCCAGCAGAGGTGTTTAAAATGCATGTATACCTC
CCTCTAAAAATTGTTGCGATAGGGTCCCCTATTCTTCTTTTTCCGCCCAT
TCTATTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_i18.g1 MSMg01no299_i18.g1 CHROMAT_FILE:
MSMg01no299_i18.g1 PHD_FILE: MSMg01no299_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:30 2005
         (293 letters)



>mm_chr3_14674576_14675266
          Length = 691

 Score =  470 bits (243), Expect = e-137
 Identities = 280/295 (94%), Gaps = 6/295 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcactgactgtatgtccaagaaattttaagacaaccttccggtttgtaagaagaccgtgg 60
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 491 tcactgactgtatgtccaagaaattttaagacaaccttcaggtttgtaagaagatcgtgg 432

                                                                       
Query: 61  aaggctggtaaatctcttgctttgttcttttttgtaatcgtgagttctatacagaatgac 120
           ||    ||||||||||||||| ||||| |||||||||| |||||||||||||||||||||
Sbjct: 431 aa----ggtaaatctcttgctctgttcctttttgtaatagtgagttctatacagaatgac 376

                                                                       
Query: 121 ttcttgggagtactgacagacacaagaagctcagagaaagtgtgggatgagtatataaac 180
           ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||
Sbjct: 375 ttcttgggagtactgacagacaccagaagctcagagaaagtttgggatgagtatatacac 316

                                                                       
Query: 181 tcatctttagtcaataaaaccagttattgaccttccggaagaaaaagggaaatcaaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tcatctttagtcaataaaaccagttattgaccttccggaagaaaaagggaaatcaaaaga 256

                                                                  
Query: 241 acagatgcttctaatttttaattcatgaagctatgaaga--tttttgacaaagaa 293
           |||||||||||||| ||||||||||||||||||||||||  ||||||||||||||
Sbjct: 255 acagatgcttctaagttttaattcatgaagctatgaagatttttttgacaaagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 691
Length adjustment: 9
Effective length of query: 284
Effective length of database: 682
Effective search space:   193688
Effective search space used:   193688
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)