TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCCCTCTGCACCAACTCTCCTTTAAAAACAATATTAGAATGCTGA
GAACAGTCACTGAGTATTGCTGGGAAAGTCAGTCTTATATGTGTGGAGTG
GTAGCACTGGTCTGAGACACGAAGCAGATGGGAAGGACTTTAGGGAGAGG
GGATAAAGAAGAGGGCAACCACAGGATGCTGCTCTGGTCTCTTCTCCACT
TTTGTTCTTATCCATGCCCCTTACTCCCTCTCTGCAGGACTCTGGCATCT
CATCTACATATTCTCAGGAGTTAAGTCATAGCAAGACAAGTGTTTGTGAG
TTTGACATAAACAGGTGCTAACTAGCTAAGCTCAGATAAGTGGCTTCTCA
CTTTGTTCCTTTCAAACAACCAGGAGGAAAGAACTAAGCATGTCTCTGAT
ATGGACATCTGTAGCAAGGATTTATTTAGCAGACTATAGTTTTCCAATGT
CTGCTCTCCTTACCATAGGTATCTCTTTCACAAACCACAAACATATACAT
TCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCCCTCTCTCTCTCTTACTT
ATCATATATTTCTTGCTGATATATCCACTTGATGACCCTTTGAACCGTTT
GGTACTTGTTTGCCTCTCTACTTATGTTACTGT

CTTTTTTGTGTNCTCTCTTTNNTTTTCCCCCCCNNNCCCCCCNTCTATCN
NNNNNNTCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTGAGATCTGTATCCT
GTTTTTAAATCGGATTATTTGTTTTTTTTTTCTTCTTCCTTTTTTGATAT
CTGGCATTTGAGTTCCTTATATTTTGTATATTATCCCTCTATCAGATGAG
TATTTGGTAAAAAAAATCCTTTTTTATTCTGTAAGCTGTCACTTTGTCTG
AATGATGGGATGGGTCCCTTCTGTGCAGATGCTTTTCAGTTTCATGACGT
CCCATTTATTGTTGATCTTAGTGCCCGTGTTAGCAGTGTTCTATTCAGAA
AGTCTTTTCCTGTACCAATGAGGTCAAGCCTATTATTCAGCCTATTTCCT
CCTCTCTCAGGTTCAGTTAAAGGCAATTTAGCTCAGAGTCTTTTTCTTTT
ATTTTCTCTCCCTCATACTTTCCTCATCTATTTCTGTGTGGCTGGCTCCA
TCTCTGTCTCTTTCTCTGTCTCCGTGTTGTCTCTTTCTGTCTCTCTCTGT
CTCTTCCTGTCTCTGACTCTGTCTCTCTCTGTGGGGTCAGTGTACCCAAT
CAGGTTACACTCAAGGCTTATAATATTTTAAGTCCACAACTTTGGGTTTG
GGCATATTTATAGCTGTTCTTGTCCCCATGAGGTCCATGGGCCATACACC
AAGAATGCTTTAGTGTTAGCCTTAGTCTTTTTTTTTA

Query= MSMg01no299_m05.b1 MSMg01no299_m05.b1 CHROMAT_FILE:
MSMg01no299_m05.b1 PHD_FILE: MSMg01no299_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:46 2005
         (581 letters)



>mm_chr3_142817216_142818196
          Length = 981

 Score = 1023 bits (529), Expect = 0.0
 Identities = 550/557 (98%), Gaps = 2/557 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttccctc-tgcaccaactctcctttaaaaacaatattagaatgctgagaacagt 63
           |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 gaattcttccctcaag-accaactctcctttaaaaacaatattagaatgctgagaacagt 648

                                                                       
Query: 64  cactgagtattgctgggaaagtcagtcttatatgtgtggagtggtagcactggtctgaga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 cactgagtattgctgggaaagtcagtcttatatgtgtggagtggtagcactggtctgaga 588

                                                                       
Query: 124 cacgaagcagatgggaaggactttagggagaggggataaagaagagggcaaccacaggat 183
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 catgaagcagatgggaaggactttagggagaggggataaagaagagggcaaccacaggat 528

                                                                       
Query: 184 gctgctctggtctcttctccacttttgttcttatccatgccccttactccctctctgcag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gctgctctggtctcttctccacttttgttcttatccatgccccttactccctctctgcag 468

                                                                       
Query: 244 gactctggcatctcatctacatattctcaggagttaagtcatagcaagacaagtgtttgt 303
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 467 gactctggcatctcatctacattttctcaggagttaagtcatagcaagacaagtgtttgt 408

                                                                       
Query: 304 gagtttgacataaacaggtgctaactagctaagctcagataagtggcttctcactttgtt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gagtttgacataaacaggtgctaactagctaagctcagataagtggcttctcactttgtt 348

                                                                       
Query: 364 cctttcaaacaaccaggaggaaagaactaagcatgtctctgatatggacatctgtagcaa 423
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 cctttcaaataaccaggaggaaagaactaagcatgtctctgatatggacatctgtagcaa 288

                                                                       
Query: 424 ggatttatttagcagactatagttttccaatgtctgctctccttaccataggtatctctt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ggatttatttagcagactatagttttccaatgtctgctctccttaccataggtatctctt 228

                                                                       
Query: 484 tcacaaaccacaaacatatacattctctctctctctccctctctctctctctctctctct 543
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 227 tcacaaaccacaaacatatacattctctctctctctctctctctctctctctctctctct 168

                            
Query: 544 ctctctctctctctctc 560
           |||||||||||||||||
Sbjct: 167 ctctctctctctctctc 151


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 82
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)