Query= MSMg01no299_m13.b1 MSMg01no299_m13.b1 CHROMAT_FILE:
MSMg01no299_m13.b1 PHD_FILE: MSMg01no299_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:48 2005
(693 letters)
>mm_chr3_85208922_85210015
Length = 1094
Score = 1297 bits (671), Expect = 0.0
Identities = 686/691 (99%), Gaps = 1/691 (0%)
Strand = Plus / Minus
Query: 4 gaattctttcttgta-gcaaacattgacttcatctttgaactccaaggagactcgggaaa 62
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 gaattctttcttggaggcaaacattgacttcatctttgaactccaaggagactcgggaaa 835
Query: 63 gctagggctactttgaggtttttaccttgagataagaggaagtcggtgaagctgaggagt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 gctagggctactttgaggtttttaccttgagataagaggaagtcggtgaagctgaggagt 775
Query: 123 ctgcatcccgcagggcctttcacgggtggtggggtcaccccaagagcaagtcaataccca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 ctgcatcccgcagggcctttcacgggtggtggggtcaccccaagagcaagtcaataccca 715
Query: 183 agtcagtggctaaccctgttgtgcgggatttatggcagcgagggttctgtgaccttagag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 agtcagtggctaaccctgttgtgcgggatttatggcagcgagggttctgtgaccttagag 655
Query: 243 aggcatcaagacacagcgttcttgtggccactctgacctccttaagggggtagggggaga 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 aggcatcaagacacagcgttcttgtggccactctgacctccttaagggggtagggggaga 595
Query: 303 agcagaggacctgggaggttccagaggtccttgagctcagtgtgcaggtttccaggtaga 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 agcagaggacctgggaggttccagaggtccttgagctcagtgtgcaggtttccaggtaga 535
Query: 363 aaggtcaaaggccagctttaatggtgtgacggattctgagggagcacgcccaggagcgtt 422
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 534 aaggtcaaaggccagctttaatggtgtgacggattctgagggagctcgcccaggagcgtt 475
Query: 423 gaggagcaggagcgaatgcagctgcacaggaagtgtggtaggaaggctcccgaactcctg 482
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gaggagcaggagagaatgcagctgcacaggaagtgtggtaggaaggctcccgaactcctg 415
Query: 483 ctatggaacgccaggggagagccaggcaccggaggggcattctccagcccctgctgacag 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ctatggaacgccaggggagagccaggcaccggaggggcattctccagcccctgctgacag 355
Query: 543 cacctgtcctcacaccaatgtattctgagagaggacatctcatcatggacttctaagctc 602
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cacctgtcctcacactaatgtattctgagagaggacatctcatcatggacttctaagctc 295
Query: 603 ttgcaagaaggcaggactgccactaccccagaagctgagaacagaagagattaaataggc 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ttgcaagaaggcaggactgccactaccccagaagctgagaacagaagagattaaataggc 235
Query: 663 aaggttggggcacaaaatcccagctgtctct 693
|||||||||||||||||||||||||||||||
Sbjct: 234 aaggttggggcacaaaatcccagctgtctct 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1094
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1084
Effective search space: 740372
Effective search space used: 740372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no299_m13.g1 MSMg01no299_m13.g1 CHROMAT_FILE:
MSMg01no299_m13.g1 PHD_FILE: MSMg01no299_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:48 2005
(668 letters)
>mm_chr3_85050435_85051502
Length = 1068
Score = 1189 bits (615), Expect = 0.0
Identities = 654/667 (98%)
Strand = Plus / Plus
Query: 1 cacagtattggtgcgcaaggtcccctgtcactccactgagctgccaatttagggcaaaca 60
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 201 cacagtattggtgcgcaaggtcccctgtcactccactgagctgccaactcagggcaaaca 260
Query: 61 tggcaccaggggagaagatgttaggacacagatgacagcaggctctctacaacctagcct 120
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggaaccaggggagaagacgttaggacacagatgacagcaggctctctacaacctagcct 320
Query: 121 cgagatgttgtaatgagaatctgctcgataaacttcttgcaggcattcactgccatgcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgagatgttgtaatgagaatctgctcgataaacttcttgcaggcattcactgccatgcat 380
Query: 181 ctcataagcagatagcagtagaagttcagctgtctccagctgtttttatctcttgaagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcataagcagatagcagtagaagttcagctgtctccagctgtttttatctcttgaagtt 440
Query: 241 catggcaaagagtgacttaaagttggggaaagcttttcacaaccaagaaagaaaatatgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catggcaaagagtgacttaaagttggggaaagcttttcacaaccaagaaagaaaatatgt 500
Query: 301 gttgttctaggcaagagacatcaggggagctatctgttaccctggcctacctgatggaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttgttctaggcaagagacatcaggggagctatctgttaccctggcctacctgatggaca 560
Query: 361 cagacccaactcaaccatggttcccatcctcctttctgctgcatccctatcttcttgatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagacccaactcaaccatggttcccatcctcctttctgctgcatccctatcttcttgatg 620
Query: 421 gcttctcactctgaatccagcctttagtttctttggcccccagatgcagaaagccagcag 480
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acttctcactctaaatccagcctttagtttctttggcccccagatgcagaaagccagcag 680
Query: 481 atctgggccttactgtgggttcattttctcacccgtcacaaggctttggctgaaactctc 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 681 atctgggccttgctgtgggttcattttctcacccgtcacaaggctttggctgagactctc 740
Query: 541 ttgaaccgatgaccaccaacaaaatgaaagcatgcaagctgttccatgtaggtctgatgc 600
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 741 ttgaaccgatgaccaccaacaaaatgaaagcatgcaagctgttccatgtaggcctgatgc 800
Query: 601 tgcattgagatcttcagaaatcaggaaccaaggaacatgaggaatctgggtgtggtgact 660
||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||
Sbjct: 801 tgcattgagatcttcagaaatcaggaaccaaggaaaacgaggaacctgggtgtggtgaca 860
Query: 661 cctgaac 667
|||||||
Sbjct: 861 cctgaac 867
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
