BAC Information

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BAC

Clone NameMSMg01-299P21
Chromosome3 (Build37)
Map Location 112,590,161 - 112,590,490
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625585, EG229746, LOC668717
Downstream geneUtp14B-ps, EG433643, OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299P21.T7 (MSMg01no299_p21.b1)MSMg01-299P21.TJ (MSMg01no299_p21.g1)
ACCAG426608AG426609
length747792
length of high quality
(start - end)		333 (46 - 378)52 (77 - 128)
definitionCHROMAT_FILE: MSMg01no299_p21.b1 PHD_FILE: MSMg01no299_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:04 2005CHROMAT_FILE: MSMg01no299_p21.g1 PHD_FILE: MSMg01no299_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGAATTGAGAAAAAAATTAGGCTAAATGTAGGCCATCCAAGTTCA
AGACCAACAAAGCCACTGTTAATATGATAATATGATAATATATTATAATA
TTATATAATATCAAATGACAATATAATAAAATCTTATATATGATATATAT
GGGAATGTATTAAATATTGTGATATTTTTCAAATTGAGTATTATGATTTC
AAAACAAATAATAGATTAAAATTATTTTAAATGCTGAAAAAAACAAAGTT
GTTGCAATCCTAATTGATAATAACAGGACTTAATTTTTTAATACAGAGTC
ATTCCAATTATATATTTATTTTATTGACCTGCCTGTAATTATTACATACA
TAAAACCCACAAAAATGAAACTATGATTGTTAAAGATTAATTTTTTATTT
TTTAATACATTTTTATTAGATTTTTTTCATTTACATTTCAAATGTTGTCC
CCAAAGTCCCCTATATACTTCCTCGCCCTGATCCCCAACCCACCCACTCC
CTTTTCTTGGCCCTGGCATTCCCCTGTCCTGGGGCATATGATCTTCACAA
GGCCAAGGGCCTCTCCTCCCATTGATGGCCAACTAGGCCATCCTCTGCTA
CAGGGAGCAGGGCAGGGGGAGGGTATAGGGGACTTTGGGGATAGCATTTG
AAATGTAAATGAAGAAAATATCTAATAAAAATATCCCTGTAAAAAAT

TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGCTAAAAAAAAATGGGAATG
AGTGGGTAGGGAAGTGGGGGGGGAGGCCCNCCCNCCNCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCGGGGGGCCGCCCCCCCCCCCGCCTCGGG
GCGCGCCCGCCCGCCCCCGCGCCCCCGCCCCCCCCCCCCGCGCCCCGCCT
TTTTTTCCCCTTCCCCCCTCCTCCCTCTTTCTCCTCCCTCCCCCCCCGCC
CCCCCCTTTTTTTTTTTTTTCCCCCCCGCCCCCCCGGGGGGGGGGTTTTT
AGTTGTTCCGGGCGGGCCCCTTTTTTTTTTTTTTTTTTTTTTNTTNGGGG
GGGCCCCCCCCTTAAAAAAAAAAAAAATTGGGGGCGGGGGGGGGGGGGGG
TGTCTCTTTTCTTTTTCTCTCCTCTTTTCATTCCTCCCCTCCATACCTTA
TTTCCTTGCCTCTTTCCATTCTTCCTCCCCCTCTCTCTTATTCCCTCCTC
TACTTACTTTTCCCTCTCCTTTGTCATCCCATTTTTTCTTTTCTCTCCCC
CCCTCCCTCTCCCCTTATACCCTTTTGTTTTCTCCTCCCTCTTCTTTCCT
TTCTCCCTCTTCCCCTTTCTCTTTCTCTCCCTCTCTTTCCACTTGCTCTC
TTCATTCTCCTCCTAACCCCCCCCTCTCTTTTCCTCTTCCTTGTCATGTT
TTCACCCCATCTCCCTTTCCTTGCCCTACCTCTCCCGTTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_p21.b1 MSMg01no299_p21.b1 CHROMAT_FILE:
MSMg01no299_p21.b1 PHD_FILE: MSMg01no299_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:04 2005
         (333 letters)



>mm_chr3_112589816_112590548
          Length = 733

 Score =  596 bits (308), Expect = e-175
 Identities = 324/330 (98%), Gaps = 2/330 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgaattgag--aaaaaaattaggctaaatgtaggccatccaagttcaagaccaa 62
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gaattctgaattgagaaaaaaaaattaggctaaatgtaggccatccaagttcaagaccaa 616

                                                                       
Query: 63  caaagccactgttaatatgataatatgataatatattataatattatataatatcaaatg 122
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 caaagccactgttactatgataatatgataatatattataatattatataatatcaaatg 556

                                                                       
Query: 123 acaatataataaaatcttatatatgatatatatgggaatgtattaaatattgtgatattt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 acaatataataaaatcttatatatgatatatatgggaatgtattaaatattgtgatattt 496

                                                                       
Query: 183 ttcaaattgagtattatgatttcaaaacaaataatagattaaaattattttaaatgctga 242
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttcaaattgagttttatgatttcaaaacaaataatagattaaaattattttaaatgctga 436

                                                                       
Query: 243 aaaaaacaaagttgttgcaatcctaattgataataacaggacttaattttttaatacaga 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aaaaaacaaagttgttgcaatcctaattgataataacaggacttaattttttaatacaga 376

                                         
Query: 303 gtcattccaattatatatttattttattga 332
           ||||||||||||||||||  ||||||||||
Sbjct: 375 gtcattccaattatatatacattttattga 346


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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