ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCATGTGGAGGGATCAGTTGAAGTGACTTGTTTGCTCCTTTTTA
ATTACTTAGTTCTCAAGAATATGTGTATGAAAGAAATATTTTCTTTGGGA
TTATTCAAGAATGAGAGAGAGAGAGACAGAGAGAGAGAGAGACAGAGACA
GAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAAGAAAGCTCCCAGAAACTCACAAGGAGCACCC
CCTTCTGGTCTCAGCCATTGACTCATGTATGCATCTACAATACGCTTTCT
ATTCTGTAATGCTGTCAGTTCTCCACTTGTTTCTTTCCTCTAATAATGTG
TTTAGTTTTAATACACTCAGCAATCTGTGTTATCTCTAATTATCTCTTTC
CCTCTCTCTCATGTGTGTTTCATTGTAATACAGTGTGATTTATTATCCAG
CATGTCACATGGTTTCATTGTTATTCATAGCTAAATAAAACTCTTTTTTG
AATAATTTTTTTATCTACCCATTCTCTGGTGGACCTCTGTGCTGACCCCT
ATCTGCCCTACCCTGATTAGCGCATAAATAATCACGTGAGTGCCGATGCT
CTCTACACAGCTGACATGTTTTCTTTCACGTAAACTCTGGGATCCGCCAT
ATGGCCTCTCTATTCTACTTATTTCTGCTCTGAG

CGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGTTGAGGTTTGTACCTCACTTTT
TAATTGAGTAGATCCTTTTGTACACCTGATAAACGGGCAGAGAAAGAAAG
TATAAGAAAAAACACCTATTACAATGGCCACAAGTAATATAAAATGTCTT
TGATGTAACTCTAACCAAGCAAATATAAGATCTGGCTGACAATAACTCCA
AGTCCCAGAAGGAAGAAATTGAAGGATATCAGAAGATGCTCATACTCATT
GATAGGATTAACATAGTGAAAATGGCCATCTTACCAAAAGCAATCTACAG
ATTAAATGCAATCCCCTTCTTTTTTCTCACACCCACTTTATAGACCTCAA
ATGAGCAATTATTGTGACAAATATTAAAAAATGAACCAGCACGTTCCAGC
ACTGGTACTTCCATCTCTCTGCCCAGGCAGCCTGACAGGCCATGCACTGG
AGGGCAATGGCTGACCTGTTTTTACCTCATGGAAACTCTGACTCAAATAC
AAATGGATCAAGGACCTCAATATAAAACCGGATACACTAAATCTCATTGA
AGAGGGAATGGAAAATATCCTTAATGAATTGGTACAGGAGACAATTTCCT
GAACAAAATAAACCAATGGATCAGGCTCTAAAGTCAACTGAAACTGCAAA
GCTTTTGTAAGGCCAAAAAAAAAAAAAAAAAA

Query= MSMg01no300_d03.b1 MSMg01no300_d03.b1 CHROMAT_FILE:
MSMg01no300_d03.b1 PHD_FILE: MSMg01no300_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:18 2005
         (525 letters)



>mm_chr3_150099176_150100100
          Length = 925

 Score =  739 bits (382), Expect = 0.0
 Identities = 460/526 (87%), Gaps = 63/526 (11%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatgtggagggatcagttgaagtgacttgtttgctcctttttaattacttagtt 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 gaattccatgtggagtgatcagttgaagtgacttgtttgctcctttttaattacttagtt 841

                                                                       
Query: 65  ctcaagaatatgtgtatgaaagaaatattttctttgggat-----tattcaagaatgaga 119
           ||||||||||||||||||||||||||||||||||||||||     |||||||||||||||
Sbjct: 840 ctcaagaatatgtgtatgaaagaaatattttctttgggattattctattcaagaatgaga 781

                                                                       
Query: 120 gagagagagacagagagagagagagacagagacagagagagagagagacagagagagaga 179
           |||                                              |||||||||||
Sbjct: 780 gag----------------------------------------------agagagagaga 767

                                                                       
Query: 180 gagagagagagagagagagagagagagagagagagagagagaagaaagctcccagaaact 239
           |||||||||||||||||||||||||||||||||||||||||            |||||||
Sbjct: 766 gagagagagagagagagagagagagagagagagagagagag------------agaaact 719

                                                                       
Query: 240 cacaaggagcacccccttctggtctcagccattgactcatgtatgcatctacaatacgct 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 cacaaggagcacccccttctggtctcagccattgactcatgtatgcatctacaatacgct 659

                                                                       
Query: 300 ttctattctgtaatgctgtcagttctccacttgtttctttcctctaataatgtgtttagt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ttctattctgtaatgctgtcagttctccacttgtttctttcctctaataatgtgtttagt 599

                                                                       
Query: 360 tttaatacactcagcaatctgtgttatctctaattatctctttccctctctctcatgtgt 419
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tttaatacactcagcgatctgtgttatctctaattatctctttccctctctctcatgtgt 539

                                                                       
Query: 420 gtttcattgtaatacagtgtgatttattatccagcatgtcacatggtttcattgttattc 479
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 538 gtttcattgtaatacagtgtgatttattatccagcatgtcacatgatttcattgttattc 479

                                                         
Query: 480 atagctaaataaaactcttttttgaataatttttttatctacccat 525
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 atagctaaataaaactcttttttgaataatttttttatctacccat 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 94
Number of extensions: 32
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)