BAC Information

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BAC

Clone NameMSMg01-300E14
Chromosome3 (Build37)
Map Location 136,487,926 - 136,645,196
singlet/doubletdoublet
Overlap genePpp3ca, LOC668870
Upstream geneSlc39a8, LOC100039350, LOC383923, Bank1, LOC100039477, LOC668868
Downstream geneLOC100039447, Emcn, EG229862, Ddit4l, LOC668874, H2afz, Dnajb14, Map2k1ip1, Dapp1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300E14.T7 (MSMg01no300_e14.b1)MSMg01-300E14.TJ (MSMg01no300_e14.g1)
ACCAG426815AG426816
length740743
length of high quality
(start - end)
314 (42 - 355)270 (73 - 342)
definitionCHROMAT_FILE: MSMg01no300_e14.b1 PHD_FILE: MSMg01no300_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:24 2005CHROMAT_FILE: MSMg01no300_e14.g1 PHD_FILE: MSMg01no300_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,487,926 - 136,488,234)(136,644,927 - 136,645,196)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCCCAAATGAATAAACATACGCATGATAACAGTCTACTGTGTTAGGTTGG
GGGAGCTCCCCAGTGCCCCAGCTGGATGATCTTACGTGGCTTCAGCACCA
AAAGGAGCCATAGGGCGAGAAGCCACTGTATACTTAGGAAGGAAGCTAAT
ATTTGGTCGAAGTGAAAGGAAAAAAGTTGGCTGATTAGCCTCCCAGTCAC
AAAGGGGATATAGAAGTTCAGTTTGCCATAGCAAGAATTTCTTCACCTAG
GAGTACTTGGGTAAGACTTTTAAACCTTAGGTGTATATGGTTAACACTAA
AATTCNCTAAATTCCATAACGAGTGCATGGAAATTCAAGTTCATCTTTTT
TATATGTGTGCCAAAAAAAAAAAAAAAGAGCTGTTCTTGTTCTGCTATGA
ATAGGAAGTATACTTCACAATTTTAGAAAGTCTGCTGTCTTTAACCTTTC
TTCATTCAACCCTCGTATCATGTTTCTGCCTTACACAAACAAACATACAA
ACTTAATTAACCAAATTATACATCTTATCCCACTACCTATGATACCTCTA
TTTAATTGCTACCTTCACGCTTTGGAGCAATACCCCAGTGTTTAACATCA
CTGACTGTTCTTCCTGATGTCTCGACTTCAATTCTCAGCCTCTATCTGCC
TGCTTTTTACGCTTGTTTAAGCTCACCCGCTTCCTTCTTC
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTATGGCAGTGGAGTTTGCTCGGGGAACG
GAGTTCATCCATCTGGACTCTCAACTCAGGACTGAGAAGTCACTTCTGAA
AATAGAGCTCTGAGAAGAGCTGTTTCCCAGGTTGCCTGCGCATTAAGTCC
GGGACTCCAGAAACCTGTCGTTACCAGGGCCCATATGGGCAGCCAATTCA
AAGGACGATACTGTTGCTTTGATCACATGCCTTTCTGCTTTTCAGTTGGT
GACATGTCGGGCTATACCATGATAGTCTGCTCACGAAAACCTTAGAGGGC
CTTGTCTTTTTCACCGCCCTCCACCCCCATTTGGTCATAATAAGCATGGG
CACGCCTCAAGCTGGAGAAATGAAACTTAAGTGAACCGGTGTCAGATGCT
TATTCTCTGACACCATACGCAACTCTTTCCAGAGCTTAGCCATTGCATCC
AGGTCCCTACGAACTGTTCTACACATTGCAATCATATGCTGCCTAAAAAT
ATCAAATCGTCTTCCAGCCGGACCTGACTCCTTTCCTCCAGTTATCTGTG
CTCCCATGTATAAATTTTGGACATGTTTCTGTTTCGAATTACCTATATGC
ATTCCAAAAAAGCCCCTTACAACAGATAAAAACAGCTATGCACTCCACTA
TTCTCCTGTTTGCACAATGTCTTCCCTTGACCCTCCCCAATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_e14.b1 MSMg01no300_e14.b1 CHROMAT_FILE:
MSMg01no300_e14.b1 PHD_FILE: MSMg01no300_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:24 2005
         (314 letters)



>mm_chr3_136487723_136488436
          Length = 714

 Score =  567 bits (293), Expect = e-166
 Identities = 305/309 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccccaaatgaataaacatacgcatgataacagtctactgtgttaggttggggga 63
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccccaaatgaataaacatacacatgataacagtctactgtgttaggttggggga 263

                                                                       
Query: 64  gctccccagtgccccagctggatgatcttacgtggcttcagcaccaaaaggagccatagg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gctccccagtgccccagctggatgatcttacgtggcttcagcaccaaaaggagccatagg 323

                                                                       
Query: 124 gcgagaagccactgtatacttaggaaggaagctaatatttggtcgaagtgaaaggaaaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcgagaagccactgtatacttaggaaggaagctaatatttggtcgaagtgaaaggaaaaa 383

                                                                       
Query: 184 agttggctgattagcctcccagtcacaaaggggatatagaagttcagtttgccatagcaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agttggctgattagcctcccagtcacaaaggggatatagaagttcagtttgccatagcaa 443

                                                                       
Query: 244 gaatttcttcacctaggagtacttgggtaagacttttaaaccttaggtgtatatggttaa 303
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| 
Sbjct: 444 gaatttcttcacctaggagtacttgggtaagacatttaaaccttagttgtatatggttag 503

                    
Query: 304 cactaaaat 312
           |||||||||
Sbjct: 504 cactaaaat 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no300_e14.g1 MSMg01no300_e14.g1 CHROMAT_FILE:
MSMg01no300_e14.g1 PHD_FILE: MSMg01no300_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:24 2005
         (270 letters)



>mm_chr3_136644727_136645396
          Length = 670

 Score =  484 bits (250), Expect = e-141
 Identities = 265/270 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatggcagtggagtttgctcggggaacggagttcatccatctggactctcaactcaggac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tatggcagtggagtttgctcggggaacggagttcatccatctggactctcaactcaggac 411

                                                                       
Query: 61  tgagaagtcacttctgaaaatagagctctgagaagagctgtttcccaggttgcctgcgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tgagaagtcacttctgaaaatagagctctgagaagagctgtttcccaggttgcctgcgca 351

                                                                       
Query: 121 ttaagtccgggactccagaaacctgtcgttaccagggcccatatgggcagccaattcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 350 ttaagtccgggactccagaaacctgtcgttaccagggcccatatgggcaaccaattcaaa 291

                                                                       
Query: 181 ggacgatactgttgctttgatcacatgcctttctgcttttcagttggtgacatgtcgggc 240
           ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 290 ggacgatactgctgctttgatcacatgcctttctgcttttcaggtggtgacatgtccggc 231

                                         
Query: 241 tataccatgatagtctgctcacgaaaacct 270
           || |||||||||||||||||||||||||||
Sbjct: 230 tagaccatgatagtctgctcacgaaaacct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space:   172521
Effective search space used:   172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)