Query= MSMg01no300_i02.b1 MSMg01no300_i02.b1 CHROMAT_FILE:
MSMg01no300_i02.b1 PHD_FILE: MSMg01no300_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:40 2005
(293 letters)
>mm_chr3_67887096_67887788
Length = 693
Score = 509 bits (263), Expect = e-148
Identities = 286/295 (96%), Gaps = 4/295 (1%)
Strand = Plus / Minus
Query: 1 cacagtaaaatgctgtctcaaaaaaacaaaacaaagaaagtacttcacat--atcctgag 58
||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||
Sbjct: 493 cacagtaaaatgctgtctcaagaaaacaaaacaaagaaagtacttcacatacatc--gag 436
Query: 59 gttcaatgtatgtgaagtaactactccatataacagtcacagcaacgtcagagataagtg 118
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gtgcaatgtatgtgaagtaactactccatataacagtcacagcaacgtcagagataagtg 376
Query: 119 agcctgtggccattcatgacattccaaatgcattatacatcaggaggagcctacagacat 178
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 375 agcctgtggccatgcatgacattccaaatgcattatacatcaggaggggcctacagacat 316
Query: 179 gtggaaccactgttagaaccattgtgctttatgaaatgacccatccagacagcttaaaca 238
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 315 gtggaaccactgttagaaccattgtgctatatgaaatgacccatccagacagcttaaaca 256
Query: 239 aagtctcactatgtactactacacattttcatactgtgtggtatgaaaatgatgt 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aagtctcactatgtactactacacattttcatactgtgtggtatgaaaatgatgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space: 194256
Effective search space used: 194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no300_i02.g1 MSMg01no300_i02.g1 CHROMAT_FILE:
MSMg01no300_i02.g1 PHD_FILE: MSMg01no300_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:40 2005
(289 letters)
>mm_chr3_67750257_67750945
Length = 689
Score = 509 bits (263), Expect = e-148
Identities = 281/287 (97%)
Strand = Plus / Plus
Query: 1 caggggcctgcttatttactgaatctattcagctttgatctgaattatcacctagggagt 60
||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 201 caggggcctgcttatttgctgaatctattcagctttgatctgagttattacctagggagt 260
Query: 61 catgaaacaaagccaagaatgaatagaaaatacatacacaaaagagcaaatgtaacttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgaaacaaagccaagaatgaatagaaaatacatacacaaaagagcaaatgtaacttcc 320
Query: 121 ttcttgtgaccttttctgcccttctaggaccttcaacagatggctttcaaacactcagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcttgtgaccttttctgcccttctaggaccttcaacagatggctttcaaacactcagat 380
Query: 181 gggtagcatttcttccagaactgacatattcaagctgtcttcctcagaaactttccacac 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggtagcatttctcccagaactgacatattcaagctgtcttcctcagaaactttccacac 440
Query: 241 agcatccagcccttcccatcatcaaaatttccctatttcctggcacg 287
|||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 441 agcatccagctcttcccaccatcaaaatttccctatttcctggcacg 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
