BAC Information

Click to search

BAC

Clone NameMSMg01-300J03
Chromosome3 (Build37)
Map Location 25,326,108 - 25,326,282
singlet/doubletsinglet
Overlap genenone
Upstream geneEG635702, LOC100039592
Downstream geneNlgn1, LOC621017, LOC229152
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300J03.T7 (MSMg01no300_j03.b1)MSMg01-300J03.TJ (MSMg01no300_j03.g1)
ACCAG427024AG427025
length727741
length of high quality
(start - end)
181 (136 - 316)343 (383 - 725)
definitionCHROMAT_FILE: MSMg01no300_j03.b1 PHD_FILE: MSMg01no300_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:45 2005CHROMAT_FILE: MSMg01no300_j03.g1 PHD_FILE: MSMg01no300_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXATATTTCGAAGGCGACGGAANN
CCCCAAGGTTGCCCCACGGGGGAGANNNCCANAGGNCANCNAAAAAACGG
ACGNNGNCTGTTTTNCCCAAAGGAGAGGGAAGANACATCTAAGAGTGTTA
CTTTCTAAACAAAAGTGATGGTTATAGGATTTGATGTATTGGATATGATT
ACATTTTATCTACATTTTTATATTTTCTTATACTTAACAAAATGTTTTTT
TTCTCTGAGTGTCATAAAGTCCTAAATACATTGCATAAATTTTCATGTAG
AAGAAGCATATTCTATTTTTTTGCNGNANANNAAGNACNNCCNNCNGCCC
AAGTTCTGGAAAGCCGCCCCCACGANCNNCAGGCNAAAACANNNCAANCG
GGCCGGAAAACACGGCAGAACAAAAAAAGAGCAGCCNNCCGCNCCAAAAG
GACAGGNCNCCNCAAAAACAGACCNNCGGGNNCCANGGACGCNCNACNNA
CNCNNNAGGACGCNCAACCNNAAAANNAGAGCCAANAAACANCGGGCCCC
CCCNCNCNCAGAGAAGCCAGAAGCCAGAGAACGCCACNCAAGAAGGACAG
GGCNAAGCCACNCACCNCNGCAGGAAGCAAGGCCCAAACNCCNCNANNNC
TTCGGTAAATGANGCCNAACACGCCAGACAACGGGCACGGAACAGGACCC
AAGGCCCAGCCCGGGGGCCAACAACCN
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCTTCATCCTTAATCATCAGGGAAATTCAAA
TCAAAACAACCCTGAGATTCCACCTCACAACAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGTATATATCCAGAACATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGT
GGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCT
AAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_j03.b1 MSMg01no300_j03.b1 CHROMAT_FILE:
MSMg01no300_j03.b1 PHD_FILE: MSMg01no300_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:45 2005
         (181 letters)



>mm_chr3_25325904_25326485
          Length = 582

 Score =  323 bits (167), Expect = 4e-93
 Identities = 173/175 (98%), Gaps = 1/175 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   taagagtgttactttctaaacaaaagtgatggttataggatttgatgtattggatatgat 64
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 379 taagagtgttactttctaaacaaaagtgatgattataggatttgatgtattggatatgat 320

                                                                       
Query: 65  tacattttatctacatttttatattttcttatacttaacaaaatg-ttttttttctctga 123
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 319 tacattttatctacatttttatattttcttatacttaacaaaatgtttttttttctctga 260

                                                                  
Query: 124 gtgtcataaagtcctaaatacattgcataaattttcatgtagaagaagcatattc 178
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gtgtcataaagtcctaaatacattgcataaattttcatgtagaagaagcatattc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 582
Length adjustment: 8
Effective length of query: 173
Effective length of database: 574
Effective search space:    99302
Effective search space used:    99302
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)