BAC Information

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BAC

Clone NameMSMg01-300L11
Chromosome3 (Build37)
Map Location 7,680,639 - 7,681,075
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039349, Olfr289-ps1, EG667801, Pkia, LOC667807, 3110050N22Rik, Il7
Downstream geneLOC620822, LOC633072, LOC545500, LOC620966, Stmn2, Hey1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300L11.T7 (MSMg01no300_l11.b1)MSMg01-300L11.TJ (MSMg01no300_l11.g1)
ACCAG427130AG427131
length743759
length of high quality
(start - end)
437 (73 - 509)291 (71 - 361)
definitionCHROMAT_FILE: MSMg01no300_l11.b1 PHD_FILE: MSMg01no300_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:56 2005CHROMAT_FILE: MSMg01no300_l11.g1 PHD_FILE: MSMg01no300_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGA
ATTCACTTACTATCTCAGAAGAGCAATAAGCTGGTGTTAAATTAGCACCT
CTGTTTGCTTTTTTCTTATACTCTCCCAAAAGAAAGATTAATGAGCAGGT
TTTCTGCACTCAACTATAGCTTTTCTTAGAGGAATGTGGTGTCTACATCA
AAATCCCATTTAGATGCAGAAAAACTCACTTGCAAGCAAAGATACCTTTT
CACCTTTCTTCTAGTTTCCCATTCTTATTTTTTTCCTAGCAAGCAAACAT
TTACTCCTATTTAGGTGTCCTTCAGCAACCTTCCCTACCCTCTGATGCCA
TGTATTATTGTTTGAGTCTCACTAAGTAAGATGGAAAAAAAATGAGAGTT
CAGCAAAGGTGGAAACAATGAGAGAAAAACCTGTGGGGTCATTTTACAAA
TGGAATCGCTAAATAGCAGTGCTTCTTGCTGGGTAATAGCATATAACCTT
TAAATCACAGATATTAGAGACAGGAGGTCTGGCAGGTCCCCTTGTCTACC
TCCTGTATTAGCTTTGTGCATTTCCCATGAAATGACATGAGTCCTGAGCA
TTTGTTGTATCCCTGGGGGAACTTACTCCTGTGTAACATATATCCCTGTT
GAGAAAACTTCTCAGGGAACTGGCCCGCTTGTCCTCTGCTAATATCACAT
TGCCCTGAATCCCTCCTCCCTTTGGAAATGCTATCATACTTAT
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCCGAATTCTTCTTGAGAGATTTATCCTTTGATGAGTA
TGCACTGTTCTTCCTTATTTTTCTTGAGAACTTTTGGTTGAAAGTTGATT
TTATTCGATATTAGAATGGCTACTCCAGCTTATGTCTGGGGACCATTTGC
TTGAAAAATTGTTTTCCAGCCTTTTACTCTGAGGTAGTGTCTGTCTTTGA
CACTGAGGTACATATCCTATATGCAGCAAAGTGCTGGATCCTGTTTATGT
ATCTAGTCTGTTAGTCTATGTCTTTTTATTGGGAAATTGAGTCCGCTCAT
GTTAAGAAATATTATGNATTTACCGCCCCGCGCCTCCTGTTATTTCTGTT
GCTAGAGGTAGAATATGTATGTGTGGATAAAAAAAAATAAGGTTCGTTGA
AAGATTATTGTTTTGTTTTTTCTAGGGCGTATTTTTTCCTCTTGTGTTGG
CGCTTTCTGCCTATTATCTCCTGTATCTCCAGATTTTTGGTACTATTCTG
CGTACATCTGTTTCTGCTGTGCCTATACCCTGTCCCATCTTTCATACGTC
CACCTGTTATCTCCCGCTGATAACCATTAAACTGGTTTTGTTTCATTGTG
TTTTTTTTACCGATTTATATGTTCTTCCGCTTTTCAATCTTTTGTCCCTT
TGTACCCCTTATTCCGCTATCCCTTGTTCCTCTTCTTTTATTTCGCCCGC
CCTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_l11.b1 MSMg01no300_l11.b1 CHROMAT_FILE:
MSMg01no300_l11.b1 PHD_FILE: MSMg01no300_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:56 2005
         (437 letters)



>mm_chr3_7680439_7681275
          Length = 837

 Score =  785 bits (406), Expect = 0.0
 Identities = 430/438 (98%), Gaps = 2/438 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaataagctggtgttaaattagcacctctgtttgcttttttcttatactctcccaaaag 60
           |||||||||||||||||||||||||||||||||||||||||||||| ||| |  ||||||
Sbjct: 201 gcaataagctggtgttaaattagcacctctgtttgcttttttcttagact-tgtcaaaag 259

                                                                       
Query: 61  aaagattaatgagcaggttttctgcactcaactatagcttttcttagaggaatgtggtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaagattaatgagcaggttttctgcactcaactatagcttttcttagaggaatgtggtgt 319

                                                                       
Query: 121 ctacatcaaaatcccatttagatgcagaaaaactcacttgcaagcaaagat-accttttc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 320 ctacatcaaaatcccatttagatgcagaaaaactcacttgcaagcaaagatgaccttttc 379

                                                                       
Query: 180 acctttcttctagtttcccattcttatttttttcctagcaagcaaacatttactcctatt 239
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aactttcttctagtttcccattcttatttttttcctagcaagcaaacatttactcctatt 439

                                                                       
Query: 240 taggtgtccttcagcaaccttccctaccctctgatgccatgtattattgtttgagtctca 299
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 440 taggtgtccttcagcaaccttcccaaccctctgatgccatgtattattgtttgagtctca 499

                                                                       
Query: 300 ctaagtaagatggaaaaaaaatgagagttcagcaaaggtggaaacaatgagagaaaaacc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctaagtaagatggaaaaaaaatgagagttcagcaaaggtggaaacaatgagagaaaaacc 559

                                                                       
Query: 360 tgtggggtcattttacaaatggaatcgctaaatagcagtgcttcttgctgggtaatagca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgtggggtcattttacaaatggaatcgctaaatagcagtgcttcttgctgggtaatagca 619

                             
Query: 420 tataacctttaaatcaca 437
           || |||||||||||||||
Sbjct: 620 tagaacctttaaatcaca 637


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)