Query= MSMg01no301_a24.b1 MSMg01no301_a24.b1 CHROMAT_FILE:
MSMg01no301_a24.b1 PHD_FILE: MSMg01no301_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:22 2005
(696 letters)
>mm_chr3_144060962_144062047
Length = 1086
Score = 1133 bits (586), Expect = 0.0
Identities = 662/693 (95%), Gaps = 12/693 (1%)
Strand = Plus / Minus
Query: 5 gaattccaacatgcactccgactgcaagatcaaaggcgtgataggcagaaaacgaagggt 64
||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 886 gaattccaacacgcactttgactgcgagatcaaaggcgtgataggcagaaaacgaagggt 827
Query: 65 tgagttggcagaagagaaagagaaaaggaaggaagggttacaagaccagggatgccatgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 tgagttggcagaagagaaagagaaaaggaaggaagggttacaagaccagggatgccatgt 767
Query: 125 agccatcttctgacctctgcttcacccttctggtcaatcacatgcttaatgtctccagca 184
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 766 agccatcttctggcctctgcttcacccttctggccaatcacatgcttaatgtctccagca 707
Query: 185 cctgtcccctgccactacccaacccacaggaagtttgatctatactaaaat-accctagt 243
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 706 tctgtcccctgccactacctaacccacaggaagtttgatctatactaaaataaccctagt 647
Query: 244 ggcaaatcaaaaggactcagtaaacagtaccagttgctaccaagtctaagaccttggccc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ggcaaatcaaaaggactcagtaaacagtaccagttgctaccaagtctaagaccttggccc 587
Query: 304 agacttttactaaactgcagaaaaattgaaaggcacattttatataccatgttttttatt 363
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 586 agacttttaccaaactgcagaaaaattgaaaggcacgttttatataccatgtttttaatt 527
Query: 364 cgcccccagggtggaagagaggctatcagagaggatgtggccatgcataggagataaaac 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 cgcccccagggtggaagagaggctatcagagaggatgtggccatgcataggagataaaac 467
Query: 424 atgtgagcacactggcttccttattcccacaatggaattttctccagatccttgccttct 483
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 atgtgagcatactggcttccttattcccacaatggaattttctccagatccttgccttct 407
Query: 484 gaaatgatgagatactagatgcaattgcactgtaataccactagggtgactctgcctgtg 543
||| |||||| || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 406 gaa---atgagacaccagatgcaattgcactgtgataccactagggtgactctgcctgtg 350
Query: 544 gcggcacattcctaccattgccttgtgtggaaatcagtgagtgcaacggtgggagacctg 603
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 349 gcggcacattcttaccattgccttgtgtggaaatc----agtgcaacggtgggagacctg 294
Query: 604 gtcaaccatccttcggctcanacccacatatccctttacctataaaagcctctattgctg 663
||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gtcaaacacccttcggctcaaacccacatatccctttacctataaaagcctctattgctg 234
Query: 664 aaacagaagaaagagtctatctacatttccggt 696
|||||| |||||||||||||||||||||||
Sbjct: 233 aaacag----aagagtctatctacatttccggt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1086
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1076
Effective search space: 738136
Effective search space used: 738136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no301_a24.g1 MSMg01no301_a24.g1 CHROMAT_FILE:
MSMg01no301_a24.g1 PHD_FILE: MSMg01no301_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:22 2005
(362 letters)
>mm_chr3_143857008_143857769
Length = 762
Score = 650 bits (336), Expect = 0.0
Identities = 354/360 (98%)
Strand = Plus / Plus
Query: 1 gaagtgtgcctatgtgtgccagggcaaccacagctatcacacactgtgtccatcacagcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagtgtgcctatgtgtgccagggcaaccacagctatcacacactgtgtccatcacagcg 260
Query: 61 tttgtggtgtctgggacttgaagacaggactggtaccgaggagaaatgttctttctatcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgtggtgtctgggacttgaagacaggactggtaccgaggagaaatgttctttctatcc 320
Query: 121 cctgtaggaaaggtatggtgttttaaagagacacaaatggtaccttgagatgatacacgt 180
|||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 cctgtaggaatgctatggtgttttaaagagacgcaaatggtaccttgagatgatacacgt 380
Query: 181 tgccttgggccctcatgacgagctcacttgcaggaatcgactgtccacaggcactgcaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgccttgggccctcatgacgagctcacttgcaggaatcgactgtccacaggcactgcaag 440
Query: 241 caccgctattcccaaataacctgcaacaaaggaggatggttagcgcccttacgtaagcaa 300
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 441 caccgctattcccaaataacctgcaacaaagaaggatggttagcgccgttacgtaagcaa 500
Query: 301 tcccgatcctaagataggggaaagacagacccagctaccccctggccttccctcctggaa 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcccaatcctaagataggggaaagacagacccagctaccccctggccttccctcctggaa 560
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space: 265809
Effective search space used: 265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
