XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CAGCTAATAATGATAGTCTTCCAATCTATTTGTTAATAGTTTCTTGATTA
GTTTAACAGATTTTTATGACCAATGAATTACATAGACTGGATAAAGTGTC
TTAAGAACTCTTACTCCCAAAGCCTGACATATATAATGAAGTCAAAATAC
ATTAAAGGCATAACTGAAGAGGAAGTGGAACTCAGATACACCCAAACTCA
ACCTAAGCCTTTCCCATTTGTCTGAAGAGATGTTTTAAAACTCATTAGAC
TAGACTCTGGTTCCGATGACCTTCCAAGATAACAAAAAGGACACACATCC
TAATCCAGACTGAAGAAGCAATGTGTCCCTAAATAAGAAATCAGAAAGAA
TACACTCACAGTTGAAGAACAAGCCCCCAAGGAAACCAACCACAGGCTGT
GATTGTGTGCTCAGCCACATTAATGAGGCTCCAGTCATAAAACTGTTTTA
AAACATTTCTCAACTCTGAATGCCTTTAGGAGAACAGCAGACATGCCTGG
GCAGATTCTCTACAAATAGCTTTTGAGCCCAGGGTCAATGATAGAGAGTG
CATAGGAAAACAGGAAACCTTGCTTGAGAATGAAATGAATTGACAGGAGA
AAGAGATAGGTGAAAACTCCAACGTATAGGAGAGCACGGGTTGTTGAGAC
AAACATAACCCTATAGCAGCCGCACATAATACAAAAGCTACAGAATGG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCACACAGAGGGATATAGAGCTTTATTTCATTC
AAGAAAACTTTCTGCTACTGCACTTTCTAGTAGCCAGGTAATTTAGCCTT
GCTTTTCTCTTTCTTGGGAAGATAGTCCCTGCTTTGCATTTGTTTTAGTC
ACTGTCTTTTTGGTATTTTATAAGTCCATTTTTCTGGCTGCAACATTGCT
TCTGAATCCCAGATCATCTTCAGTTCTCAACATACAAATTTCTGATATTT
GACTTATGGGAGAACATTTCTAACTTAACTAATATATCCCTAAATGATCT
TGATCCTGAGTTTTCTGTATCCCTAAATTATATACTCACACTTACCAAGC
AAATGTATGTAAGTTCATTGTTCTTCACATCAAATCTATCCAAACTTTCT
GCTTAGACTCTCTGTTGTTTGCAGCCATGTTTGTCTGCATAGCTCCAGAA
GATACTGTGCCAAGGTTCTCTGTGTTATGAATTTATGGGTCCATTTCTTG
AAATTTATGCACTGCCCTGTTCAAATTATCTTGGGGGCTTCATGTTTCCC
AATGACTTTAACATGATGGCAAACATCATTTTAAGTGTGTTTGGAAGGCA
ATAAAAGCAAGGAGATAGAAACAAAAAGAAATGGCCCATTATTAATCATC
CAAATCAAATTTATGCTTTTTATTCTAGTGTGTTCTACAGCAT

Query= MSMg01no301_d02.b1 MSMg01no301_d02.b1 CHROMAT_FILE:
MSMg01no301_d02.b1 PHD_FILE: MSMg01no301_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:32 2005
         (633 letters)



>mm_chr3_134331193_134332225
          Length = 1033

 Score = 1210 bits (626), Expect = 0.0
 Identities = 629/630 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcagctaataatgatagtcttccaatctatttgttaatagtttcttgattagt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcagctaataatgatagtcttccaatctatttgttaatagtttcttgattagt 263

                                                                       
Query: 64  ttaacagatttttatgaccaatgaattacatagactggataaagtgtcttaagaactctt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttaacagatttttatgaccaatgaattacatagactggataaagtgtcttaagaactctt 323

                                                                       
Query: 124 actcccaaagcctgacatatataatgaagtcaaaatacattaaaggcataactgaagagg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 actcccaaagcctgacatatataatgaagtcaaaatacattaaaggcataactgaagagg 383

                                                                       
Query: 184 aagtggaactcagatacacccaaactcaacctaagcctttcccatttgtctgaagagatg 243
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagtggaactcagatacacctaaactcaacctaagcctttcccatttgtctgaagagatg 443

                                                                       
Query: 244 ttttaaaactcattagactagactctggttccgatgaccttccaagataacaaaaaggac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttttaaaactcattagactagactctggttccgatgaccttccaagataacaaaaaggac 503

                                                                       
Query: 304 acacatcctaatccagactgaagaagcaatgtgtccctaaataagaaatcagaaagaata 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acacatcctaatccagactgaagaagcaatgtgtccctaaataagaaatcagaaagaata 563

                                                                       
Query: 364 cactcacagttgaagaacaagcccccaaggaaaccaaccacaggctgtgattgtgtgctc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cactcacagttgaagaacaagcccccaaggaaaccaaccacaggctgtgattgtgtgctc 623

                                                                       
Query: 424 agccacattaatgaggctccagtcataaaactgttttaaaacatttctcaactctgaatg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agccacattaatgaggctccagtcataaaactgttttaaaacatttctcaactctgaatg 683

                                                                       
Query: 484 cctttaggagaacagcagacatgcctgggcagattctctacaaatagcttttgagcccag 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cctttaggagaacagcagacatgcctgggcagattctctacaaatagcttttgagcccag 743

                                                                       
Query: 544 ggtcaatgatagagagtgcataggaaaacaggaaaccttgcttgagaatgaaatgaattg 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ggtcaatgatagagagtgcataggaaaacaggaaaccttgcttgagaatgaaatgaattg 803

                                         
Query: 604 acaggagaaagagataggtgaaaactccaa 633
           ||||||||||||||||||||||||||||||
Sbjct: 804 acaggagaaagagataggtgaaaactccaa 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no301_d02.g1 MSMg01no301_d02.g1 CHROMAT_FILE:
MSMg01no301_d02.g1 PHD_FILE: MSMg01no301_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:32 2005
         (675 letters)



>mm_chr3_134368778_134369852
          Length = 1075

 Score = 1259 bits (651), Expect = 0.0
 Identities = 669/675 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacacagagggatatagagctttatttcattcaagaaaactttctgctactgcactttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 875 cacacagagggatatagagctttatttcattcaagaaaactttctgcaactgtactttct 816

                                                                       
Query: 61  agtagccaggtaatttagccttgcttttctctttcttgggaagatagtccctgctttgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 agtagccaggtaatttagccttgcttttctctttcttgggaagatagtccctgctttgca 756

                                                                       
Query: 121 tttgttttagtcactgtctttttggtattttataagtccatttttctggctgcaacattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tttgttttagtcactgtctttttggtattttataagtccatttttctggctgcaacattg 696

                                                                       
Query: 181 cttctgaatcccagatcatcttcagttctcaacatacaaatttctgatatttgacttatg 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 695 cttctgaatcccagatcatcttcagttctcaacatataaatttctgatatttgacttatg 636

                                                                       
Query: 241 ggagaacatttctaacttaactaatatatccctaaatgatcttgatcctgagttttctgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ggagaacatttctaacttaactaatatatccctaaatgatcttgatcctgagttttctgt 576

                                                                       
Query: 301 atccctaaattatatactcacacttaccaagcaaatgtatgtaagttcattgttcttcac 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 575 atccctaaattatatactcacacttaccaagcaaatgtgtgtaagttcattgttcttcac 516

                                                                       
Query: 361 atcaaatctatccaaactttctgcttagactctctgttgtttgcagccatgtttgtctgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 atcaaatctatccaaactttctgcttagactctctgttgtttgcagccatgtttgtctgc 456

                                                                       
Query: 421 atagctccagaagatactgtgccaaggttctctgtgttatgaatttatgggtccatttct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 atagctccagaagatactgtgccaaggttctctgtgttatgaatttatgggtccatttct 396

                                                                       
Query: 481 tgaaatttatgcactgccctgttcaaattatcttgggggcttcatgtttcccaatgactt 540
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tgaaatttatgtactgccctgttcaaattatcttgggggcttcatgtttcccaatgactt 336

                                                                       
Query: 541 taacatgatggcaaacatcattttaagtgtgtttggaaggcaataaaagcaaggagatag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 taacatgatggcaaacatcattttaagtgtgtttggaaggcaataaaagcaaggagatag 276

                                                                       
Query: 601 aaacaaaaagaaatggcccattattaatcatccaaatcaaatttatgctttttattctag 660
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 275 aaacaaaaagaaatggcccattattaatcatccaaaccaaatttatgctttttattctag 216

                          
Query: 661 tgtgttctacagcat 675
           |||||||||||||||
Sbjct: 215 tgtgttctacagcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)