Query= MSMg01no301_g11.b1 MSMg01no301_g11.b1 CHROMAT_FILE:
MSMg01no301_g11.b1 PHD_FILE: MSMg01no301_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:48 2005
(316 letters)
>mm_chr3_123097216_123097931
Length = 716
Score = 542 bits (280), Expect = e-158
Identities = 306/316 (96%), Gaps = 6/316 (1%)
Strand = Plus / Minus
Query: 5 gaattctatatcttcatctgaaggcaactaggaaaacactgacttctacactgcacagag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaattctatatcttcatctgaaggcaactaggaaaacactgacttctacactgcacagag 626
Query: 65 cttcaaagcctaccccaaca--gacacactttctccaacaaggccacacctactctaaca 122
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cttcaaagcctaccccaacagtgacacactttctccaacaaggccacacctactctaaca 566
Query: 123 aggccacacctccaaatactgccactccctgggtaaagcatattcaaactaccacacaag 182
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 565 aggccacacctccaaatactgccgctccctgggtaaagcatattcaaactaccacacaag 506
Query: 183 gcaacatccaagaagcagactgctcaggttggaagcaaggctccactactatctgctaga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcaacatccaagaagcagactgctcaggttggaagcaaggctccactactatctgctaga 446
Query: 243 cccacttcccagcagcacaattcctccagctaaacccaagctctcaaagatgctattgc- 301
||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| |
Sbjct: 445 cccacttcccagcagcacaattcctccagctaaacccaagcgcccaaagattctat--ca 388
Query: 302 cc-cccaaagaaatgc 316
|| |||||||||||||
Sbjct: 387 cctcccaaagaaatgc 372
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no301_g11.g1 MSMg01no301_g11.g1 CHROMAT_FILE:
MSMg01no301_g11.g1 PHD_FILE: MSMg01no301_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:48 2005
(667 letters)
>mm_chr3_122937232_122938293
Length = 1062
Score = 1189 bits (615), Expect = 0.0
Identities = 651/665 (97%), Gaps = 5/665 (0%)
Strand = Plus / Plus
Query: 1 agagctctcttccaaccctttcatctctctgccctcccaaacaggagctggaggtgagga 60
||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 agagctcccttccaatcctttcatctctctgccctcccaaacaggagctcgaggtgagga 260
Query: 61 caccatgtcccaaaagaactaaaagacctgggacgtctgaggaactttctagatctaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccatgtcccaaaagaactaaaagacctgggacgtctgaggaactttctagatctaagt 320
Query: 121 ggctttcatcttccagttctgtgctcacaacttccatttctgcacctctcactaggtggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctttcatcttccagttctgtgctcacaacttccatttctgcacctctcactaggtggc 380
Query: 181 aggattcaactaccaaagaaagaatgttccaatagatgctcgagagcagtaattttcaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 aggattcaactaccaaagaaagaatgttccaatagatgctcgagagcagaaattttcaaa 440
Query: 241 gaaacatcggtcttcacagggaacatttatgaaagagaaaaaaataatatagctacaaag 300
||||| ||||||||||||||||||||||||||||| | |||||| |||||||||||||||
Sbjct: 441 gaaacgtcggtcttcacagggaacatttatgaaag-ggaaaaaagaatatagctacaaag 499
Query: 301 gcggtgacccatgggcttcatagaggcctagattcattttagctatagctatgcaacaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gcggtgacccatgggcttcatagaggcctagattcattttagctatagctatgcaacaag 559
Query: 361 aaagtaacctttgatgccttccaataccggcacagaattctacagttccatgttaacatt 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 560 aaagtaacctttgatgccttccaatactggcacagaattctacagttccatgttaacatt 619
Query: 421 tgatgaaaagttttttactttcttgctttctaacttcattttagctgaatgccagttcta 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 620 tgatgaaaagttttttactttcttgctttctaacttcattttagctgaatgccagttcga 679
Query: 481 atctaaatgagattatgggtattatgctaaactgaaaatcaatctaatgtgacaaagata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atctaaatgagattatgggtattatgctaaactgaaaatcaatctaatgtgacaaagata 739
Query: 541 aacaacgtattaaatagctattaggtgcaccagaaagatagctgtaattaatgcattgta 600
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 740 aacaacgtattaaatagctattaggtgcaccagaaag----ctgtaattaatgcattgta 795
Query: 601 aagaatctgtgaatacactgacgagactcagcaggctgtacttatatagtttatgcatat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 aagaatctgtgaatacactgacgagactcagcaggctgtacttatatagtttatgcatat 855
Query: 661 atata 665
|||||
Sbjct: 856 atata 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1062
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1052
Effective search space: 691164
Effective search space used: 691164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
