BAC Information

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BAC

Clone NameMSMg01-301H09
Chromosome3 (Build37)
Map Location 83,865,615 - 83,866,197
singlet/doubletsinglet
Overlap genenone
Upstream genePlrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik
Downstream geneMnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889, Fbxw7, Dear1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301H09.T7 (MSMg01no301_h09.b1)MSMg01-301H09.TJ (MSMg01no301_h09.g1)
ACCAG427655AG427656
length824772
length of high quality
(start - end)
65 (139 - 203)583 (67 - 649)
definitionCHROMAT_FILE: MSMg01no301_h09.b1 PHD_FILE: MSMg01no301_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:52 2005CHROMAT_FILE: MSMg01no301_h09.g1 PHD_FILE: MSMg01no301_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTG
GAAAACTCTAAATGTAANTGTCTCTGTTAAGNTTTCTATTGCTGNNACAA
AACACCATGACCAAAAACCAAAATGAAAANAAAAGGNGTCCTTCNNCTTA
CACTTCCACATTGCTGTTCATCACTGGANGAAANTCATGACAGGAACTCA
AAANGNNCANGATCCTACANGCANAANCTACTGCANAAAACACACANGAA
AAAAAANTGCTGCTTGCTGNCTTGCTCCTCACANCTTGCTCANCCTGCTT
TCTTATANACCCCAAATCCACCTGCAATTANNTNTTCTTCAATATCTTAN
NCNTTTTTTTTANATTCTCCTANNTCCCCNNCCCATTTCCCTTANAACTT
TCCCCCTCCTTATAACACCCCCCTTNAATTAAAAAAAAAGACTAAAAAAG
GGAATCCTAAANNTGGGCTTTCCCCTTAATTCCCNCTTTCTCAAAATTTA
AAAAANCCTTCTAACATCTTGGGGTNNNNNNCCCCCCCCCNNNNCATCAC
CAAACCTTCTATGGTTACCTTTTNNTCCCCCCGGGGCTTTTTCTTCTTCC
TTCTAATAATTTCTCCCCCCCNCCAACTAAAAAACCATCTTTTTNNNNNN
NGGTNCTNNNNNTNNNNCCCCCTTTTACTCCTGGCAATAGTAAATAAAGA
AAACGCTGATGGTTNCNNNNNNNNTCNTCCCTTCTTCTACAACAAAGGGA
GGGGGGTAAAGAACGTCTCTGGGTCTTTTCTTTTCCTCTTTCCTTTTTTT
TCTTCCGGGGGGGGGGGGGGGGGG
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTGTAAGGCAGGAAGGAAGTCTGATGTAGCAGT
GAGGAGCATTGACCACCCTTCCATGGGAAGTAGAGGTTATCGTCCCGGTA
GGAGAAGGTGGCTGAGGCAGTAGAAGTGGTAATTAGGAACAGGCACAATT
TTCAGCGTCAAGACAAAGGCAGGCTTCAATAAAAAGATGGCATGTGAGCA
AATATTACCCCACAGCTCTCTGGGATAAGAACAGTCTTGGCAGAGCACAG
CTGAGACCTTGAAACAGGAGGGTGCTGCGTGAGGCCAGTGTGGCTGGAGC
TGTGTAAGGGAGAGTACTGGAGATGAGGTCAGAGAGGAACAGGTGCAGGG
GTGTCCGCACCCCGAGGCCACAGCAGATGCGCTGACCTTTACTCTGCAAT
CATTTAAGCAGTCACAACAGGGTTTTAACAGGGTGACATGATCTGCTGTA
CACTCGATGAGGCTCCATCTGGCTGGTGTGCCGCTGTTGAAGGCAGGGAG
GCCATTAGCAGTCCAGTGAGGATGACTGTGCAGCAACTCAGACCAGAAGT
TGTGGTGGCTTGTGCCAGTCATTAGCAGTGGAGGGGCTGAGAGGCAGTCA
GGCTCCAGATATGGTCTAAAAGGATATACAAGATTTTCCAACGGTCTATG
TGGCAGTGGGATGGCTCACAGGGGAAAAGAGCTTACCACGAACTATAAAG
ACCCGGGCAGATGAAAGGTCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_h09.g1 MSMg01no301_h09.g1 CHROMAT_FILE:
MSMg01no301_h09.g1 PHD_FILE: MSMg01no301_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:52 2005
         (583 letters)



>mm_chr3_83865415_83866397
          Length = 983

 Score = 1065 bits (551), Expect = 0.0
 Identities = 575/583 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtaaggcaggaaggaagtctgatgtagcagtgaggagcattgaccacccttccatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tctgtaaggcaggaaggaagtctgatgtagcagtgaggagcattgaccagccttccatgg 260

                                                                       
Query: 61  gaagtagaggttatcgtcccggtaggagaaggtggctgaggcagtagaagtggtaattag 120
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 gaagtagaggttatcgtcccagtaggagaaggtggctgaggcagtagaagtggtaagtag 320

                                                                       
Query: 121 gaacaggcacaattttcagcgtcaagacaaaggcaggcttcaataaaaagatggcatgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 gaacaggcacaattttcagcgtcaagacaaaggcaggcttcaataaaaagacggcatgtg 380

                                                                       
Query: 181 agcaaatattaccccacagctctctgggataagaacagtcttggcagagcacagctgaga 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 agcaaatattaccccacagctctctgggacaagaacagtcttggcagagcacagctgaga 440

                                                                       
Query: 241 ccttgaaacaggagggtgctgcgtgaggccagtgtggctggagctgtgtaagggagagta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttgaaacaggagggtgctgcgtgaggccagtgtggctggagctgtgtaagggagagta 500

                                                                       
Query: 301 ctggagatgaggtcagagaggaacaggtgcaggggtgtccgcaccccgaggccacagcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctggagatgaggtcagagaggaacaggtgcaggggtgtccgcaccccgaggccacagcag 560

                                                                       
Query: 361 atgcgctgacctttactctgcaatcatttaagcagtcacaacagggttttaacagggtga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgcgctgacctttactctgcaatcatttaagcagtcacaacagggttttaacagggtga 620

                                                                       
Query: 421 catgatctgctgtacactcgatgaggctccatctggctggtgtgccgctgttgaaggcag 480
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 catgatctgctgtacactcgatgaggctccatctggctggtgtgctgctgttgaaggcag 680

                                                                       
Query: 481 ggaggccattagcagtccagtgaggatgactgtgcagcaactcagaccagaagttgtggt 540
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaggccattagcagtccagtgaggatgactgtgcagcaactcagaccagaagttgtggt 740

                                                      
Query: 541 ggcttgtgccagtcattagcagtggaggggctgagaggcagtc 583
           |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 741 ggcttgtgccagccattagcagtggaggggctgagaggcagtc 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)