XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAAGGAGCACTTACAGGAGCAAGCAGTATGATAGATATTTCCACCTACAG
GCAGCTTCTAGAACTTTCCATTTTAAGTCTTTAGATCACAGTTAACCACA
GGTTACTGAAATCAAGGGAGGTTTAAAACTGGTCGTGGTGATTCCTGAAC
AGGGGCTTCATGTAAAATGTATGTGTGGCTCTGCCTGCTCCTGAAGTCCA
GTGAAGTCCTCACTATCTTCTCCCGCGGTGGTCACCATGTGCTTTGCAGA
CAGCTGGAAATTGAATTTCCCGAGTGTCCAGTCCTGCCCAGTTCTTCTTA
TGTATCACTGATTTTTTTGTTCTCTCTCCCGCAGCCTAGGGAACAGAACG
AGGGCTGTGAGCTTTATGGCTCTTGATGAAACATATAGCACAGGCTTGGC
CCTGCACACAGCTCCTTTCTGGTGTCTGTCTTTTGAACAATAAATAGCAT
CCATTGTTATTTTCTTAGGAATGAAAGTTCTTTCAATCCTCCCTCGGCTT
GGCTAGTTGTTGTATCTCTGGATCCTTTCTGTGCTCTGGGCACTCTGTCG
ACATAACATATTTATTAATTACTCCTGTTACATTACCAACAGAAAATGCT
TTGACCCCTATTATGCAGCAGTGACCCCCGATGTCTCAGATTTCCTGTCC
GCTATGTGATGTATACAGATAGTGACTAGACATTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGTGAGAGAGAATATGGATGGTTATACAGTAA
GAAACACAGCAACACCATTTTACCTCAGTAGACTTAGGAAGATCATAACA
TTTTCCAGACAGAGAGGAAGAAAACCCTTTGACAAACTCAACAGGCATTC
TGTCTAAAAATACTCAAAACATAAATAAACAAAATGTTCTTCTACAGTTA
TAAGCATGAAGAAACCAACTCGGTACTGACCAGGAAGCTTCCTCCTTGAT
GGCTAGCCTTCATAGTACTAGAAGGTGCTATGCAGGCTGCTTAGAGGAAA
AAAAGCCATTATCAGTCTTACCCAGCTGTGAACCCTGTGAGTTGACTAAG
CTGGCAGGCTATGCCCAAAGGTGCAATAATGGTACAGATGTTATGGGAGT
AACCCACTACTTTGTTTGGATTTAATGCCCATTCCACAGGCAGAAATCCC
TGGCACTATAAAACTGGCCAAGAACCCATGCTTGCAAGCATCACATTCTG
CTCAAGCCGGCACCTGAACTCATACTTCTATAGGCAGTAAGGTCTCACCT
TGGAGCTGGTCATAGTGGCGCATGCCTTATATCCCAGTACTTGGGTGGCG
AAGGGAGGCAGATCCCTGTATACTCTACGCCAGCTTGTTTGACACAGTGA
GTTCCAGGATTGCTCAAAGCTCCCCCGTGAGATTGTC

Query= MSMg01no301_i05.b1 MSMg01no301_i05.b1 CHROMAT_FILE:
MSMg01no301_i05.b1 PHD_FILE: MSMg01no301_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:55 2005
         (322 letters)



>mm_chr3_84068705_84069426
          Length = 722

 Score =  567 bits (293), Expect = e-166
 Identities = 311/317 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaggagcacttacaggagcaagcagtatgatagatatttccacctacaggcag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gaattccaaggagcacttacaggagcaagcagtatgatagatatttccacctacaggcag 462

                                                                       
Query: 65  cttctagaactttccattttaagtctttagatcacagttaaccacaggttactgaaatca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 cttctagaactttccattttaagtctttagatcacagttaaccacaggttactgaaatca 402

                                                                       
Query: 125 agggaggtttaaaactggtcgtggtgattcctgaacaggggcttcatgtaaaatgtatgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 agggaggtttaaaactggtcgtggtgattcctgaacaggggcttcatgtaaaatgtatgt 342

                                                                       
Query: 185 gtggctctgcctgctcctgaagtccagtgaagtcctcactatcttctcccgcggtggtca 244
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 341 gtggctctgcctgctcctgaagtccagtgaagtcctcactgtcttctcccgcggtggtca 282

                                                                       
Query: 245 ccatgtgctttgcagacagctggaaattgaatttcccgagtgtccagtcctgcccagttc 304
           ||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
Sbjct: 281 ccaggtgctttgcagacagctggaaactgaatttcccgagtgcccagtcctgcccagtcc 222

                            
Query: 305 ttcttatgtatcactga 321
           |||||||||||| ||||
Sbjct: 221 ttcttatgtatctctga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no301_i05.g1 MSMg01no301_i05.g1 CHROMAT_FILE:
MSMg01no301_i05.g1 PHD_FILE: MSMg01no301_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:56 2005
         (540 letters)



>mm_chr3_83885539_83886478
          Length = 940

 Score = 1013 bits (524), Expect = 0.0
 Identities = 536/540 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgagagagaatatggatggttatacagtaagaaacacagcaacaccattttacctcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgagagagaatatggatggttatacagtaagaaacacagcaacaccattttacctcag 260

                                                                       
Query: 61  tagacttaggaagatcataacattttccagacagagaggaagaaaaccctttgacaaact 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 tagacttaggaagatcataacattttccagatagagaggaagaaaaccctttgacaaact 320

                                                                       
Query: 121 caacaggcattctgtctaaaaatactcaaaacataaataaacaaaatgttcttctacagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacaggcattctgtctaaaaatactcaaaacataaataaacaaaatgttcttctacagt 380

                                                                       
Query: 181 tataagcatgaagaaaccaactcggtactgaccaggaagcttcctccttgatggctagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tataagcatgaagaaaccaactcggtactgaccaggaagcttcctccttgatggctagcc 440

                                                                       
Query: 241 ttcatagtactagaaggtgctatgcaggctgcttagaggaaaaaaagccattatcagtct 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcatagtactagaaggtgcgatgcaggctgcttagaggaaaaaaagccattatcagtct 500

                                                                       
Query: 301 tacccagctgtgaaccctgtgagttgactaagctggcaggctatgcccaaaggtgcaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacccagctgtgaaccctgtgagttgactaagctggcaggctatgcccaaaggtgcaata 560

                                                                       
Query: 361 atggtacagatgttatgggagtaacccactactttgtttggatttaatgcccattccaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atggtacagatgttatgggagtaacccactactttgtttggatttaatgcccattccaca 620

                                                                       
Query: 421 ggcagaaatccctggcactataaaactggccaagaacccatgcttgcaagcatcacattc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggcagaaatccctggcactataaaactggccaagaacccatgcttgcaagcatcacattc 680

                                                                       
Query: 481 tgctcaagccggcacctgaactcatacttctataggcagtaaggtctcaccttggagctg 540
           ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 681 tgcgcaagccggcacctgaactcatacttctataggcagcaaggtctcaccttggagctg 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)